Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A8 F28 I1 R1	138	62.6	2119710	99.4%	2106991	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	572,368	A→G	M1M (ATG→GTG) †	ylcH →	DLP12 prophage; uncharacterized protein YlcH

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	572,368	0	A	G	88.7%	205.0 / 13.4	71	M1M (ATG→GTG) †	ylcH	DLP12 prophage; uncharacterized protein YlcH
Reads supporting (aligned to +/- strand): ref base A (3/5); new base G (32/31); total (35/36)
Fisher's exact test for biased strand distribution p-value = 7.10e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.94e-01

AAAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATC  >  NC_000913/572234‑572499

aaaGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTgcgc                                                                                                                                >  2:924676/1‑140 (MQ=255)

aaaGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTgcgc                                                                                                                                >  2:30673/1‑140 (MQ=255)

aaaGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTCTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTgcgc                                                                                                                                >  2:282222/1‑140 (MQ=255)

  aGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGcac                                                                                                                              >  2:364232/1‑140 (MQ=255)

    cTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACAt                                                                                                                            >  2:848351/1‑140 (MQ=255)

     ttCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCTCCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACAtg                                                                                                                           <  2:115029/140‑2 (MQ=255)

      tCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATAc                                                                                                                          <  2:62446/140‑1 (MQ=255)

        cAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACaa                                                                                                                        <  2:643857/140‑1 (MQ=255)

         agagagTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAAt                                                                                                                       >  2:777265/1‑140 (MQ=255)

               tAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAAc                                                                                                                 <  2:589580/140‑1 (MQ=255)

               tAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACT‑CGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAAct                                                                                                                >  2:747676/1‑140 (MQ=255)

                    gtgtTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAActctct                                                                                                            <  2:394752/140‑1 (MQ=255)

                     tgtTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGGCTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCtctt                                                                                                           <  2:352535/140‑1 (MQ=255)

                     tgtTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCtctt                                                                                                           <  1:364232/140‑1 (MQ=255)

                      gtTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGTACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCtcttc                                                                                                          <  1:927689/140‑1 (MQ=255)

                       ttttAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAActctct                                                                                                            >  2:141018/1‑137 (MQ=255)

                       ttttAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAActctct                                                                                                            <  1:141018/137‑1 (MQ=255)

                       ttttAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCtcttct                                                                                                         >  1:380947/1‑140 (MQ=255)

                       ttttAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCtcttct                                                                                                         >  2:610446/1‑140 (MQ=255)

                                 gAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAg                                                                                               >  2:335645/1‑140 (MQ=255)

                                 gAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAg                                                                                               >  2:240383/1‑140 (MQ=255)

                                           aTCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAAt                                                                                     >  2:147968/1‑140 (MQ=255)

                                             cGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGc                                                                                   <  2:380947/140‑1 (MQ=255)

                                                 tttgattttgGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCt                                                                               >  2:808163/1‑140 (MQ=255)

                                                    gattttgGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCa                                                                            <  1:243064/140‑1 (MQ=255)

                                                    gattttgGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCa                                                                            <  1:610446/140‑1 (MQ=255)

                                                          gggAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCtt                                                                      <  1:848351/140‑1 (MQ=255)

                                                           ggAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCttt                                                                     <  2:459347/140‑1 (MQ=255)

                                                               aTCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCAt                                                                 >  1:25528/1‑140 (MQ=255)

                                                                tCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATc                                                                >  2:430920/1‑140 (MQ=255)

                                                                         cATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTg                                                       >  1:344609/1‑140 (MQ=255)

                                                                          aTAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGttt                                                        <  2:508321/138‑1 (MQ=255)

                                                                          aTAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGttt                                                        >  1:508321/1‑138 (MQ=255)

                                                                           tAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGAc                                                     >  2:957709/1‑140 (MQ=255)

                                                                           tAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGAc                                                     <  1:147968/140‑1 (MQ=255)

                                                                                aTGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTg                                                <  2:675549/140‑1 (MQ=255)

                                                                                  gTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCg                                              <  1:74173/140‑1 (MQ=255)

                                                                                     aCCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAg                                           <  1:30673/140‑1 (MQ=255)

                                                                                     aCCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAg                                           <  1:924676/140‑1 (MQ=255)

                                                                                      ccGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAgg                                          >  2:804637/1‑140 (MQ=255)

                                                                                       cGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAggg                                         <  2:11605/140‑1 (MQ=255)

                                                                                       cGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAggg                                         >  1:480363/1‑140 (MQ=255)

                                                                                       cGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAggg                                         >  2:874219/1‑140 (MQ=255)

                                                                                         gAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGa                                       >  1:31187/1‑140 (MQ=255)

                                                                                         gAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGa                                       <  1:430920/140‑1 (MQ=255)

                                                                                          aGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGaa                                      <  2:897515/140‑1 (MQ=255)

                                                                                          aGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGaa                                      >  1:897515/1‑140 (MQ=255)

                                                                                               gAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTg                                 >  2:185974/1‑140 (MQ=255)

                                                                                               gAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTg                                 <  2:567805/140‑1 (MQ=255)

                                                                                                aacaacTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGa                                >  1:601913/1‑140 (MQ=255)

                                                                                                 acaacTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGaa                               <  2:11619/140‑1 (MQ=255)

                                                                                                 acaacTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGaa                               <  1:985185/140‑1 (MQ=255)

                                                                                                  caacTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAc                              <  2:569001/140‑1 (MQ=255)

                                                                                                   aacTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAAcc                             <  1:777265/140‑1 (MQ=255)

                                                                                                    acTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGaa                               <  1:329812/137‑1 (MQ=255)

                                                                                                    acTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGaa                               >  2:329812/1‑137 (MQ=255)

                                                                                                     cTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACctc                           >  1:641465/1‑140 (MQ=255)

                                                                                                     cTCCGGTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACctc                           >  2:595794/1‑140 (MQ=255)

                                                                                                     cTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACctc                           >  1:700784/1‑140 (MQ=255)

                                                                                                          gTGACTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTcaca                      >  2:600261/1‑140 (MQ=255)

                                                                                                             aCTTCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGa                   <  1:282222/140‑1 (MQ=255)

                                                                                                               ttCTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACg                 >  2:151119/1‑140 (MQ=255)

                                                                                                                 cTGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGc               <  2:601913/140‑1 (MQ=255)

                                                                                                                  tGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCa              <  1:600261/140‑1 (MQ=255)

                                                                                                                  tGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCa              <  1:185974/140‑1 (MQ=255)

                                                                                                                  tGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCa              <  1:151119/140‑1 (MQ=255)

                                                                                                                  tGCGCTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCa              <  2:31187/140‑1 (MQ=255)

                                                                                                                   gcgcTAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCAt             <  2:480363/140‑1 (MQ=255)

                                                                                                                       tAAACGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCaaa         >  2:584337/1‑140 (MQ=255)

                                                                                                                         aaCGGGGACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAAtt       >  2:957520/1‑140 (MQ=255)

                                                                                                                              ggACGTTTGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATc  >  2:864241/1‑140 (MQ=255)

                                                                                                                                   tttGTGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCa              <  2:466956/123‑1 (MQ=255)

AAAGCTTCCAGAGAGTAAAAGTGTTTTAAGAAGGAGCAATTCTATCGATTTTGATTTTGGGAAATCAACACGGCATAATTATGTCACCGGAGCCTGAACAACTCCGGTGACTTCTGCGCTAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCTTCACAGATGCAGAAATGCACCTGCAATTCTTTGCATCTAGCGTTTGACCTCTGCGGAGGGGAAGCGTGAACCTCTCACAAGACGGCATCAAATTACATC  >  NC_000913/572234‑572499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A