Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 138 62.6 2119710 99.4% 2106991 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,199,214 A→G T174A (ACA→GCA)  lit → e14 prophage; cell death peptidase Lit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,199,2140AG100.0% 250.0 / NA 66T174A (ACA→GCA) lite14 prophage; cell death peptidase Lit
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (37/29);  total (37/29)

AATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTACAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTGCACTTGGCATTGCTACGGCAGTGCTTTGTATACA  >  NC_000913/1199080‑1199347
                                                                                                                                      |                                                                                                                                     
aaTGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTgcagca                                                                                                                                  <  2:28919/140‑1 (MQ=255)
     cccAAGCCAGAAGCATATTTACAAGGAAGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATtctc                                                                                                                             <  2:823974/140‑1 (MQ=255)
     cccAAGCCAGAAGCATATTTACAAGGAAGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATtctc                                                                                                                             <  2:287278/140‑1 (MQ=255)
              gAAGCATATTTACAAGGAAGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAaga                                                                                                                    >  2:316240/1‑140 (MQ=255)
               aaGCATATTTACAAGGAAGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAagag                                                                                                                   <  1:316240/140‑1 (MQ=255)
                    tatTTACAAGGAAGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCg                                                                                                              <  2:147746/140‑1 (MQ=255)
                    tatTTACAAGGAAGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCg                                                                                                              >  1:194430/1‑140 (MQ=255)
                    tatTTACAAGGAAGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCg                                                                                                              >  1:147746/1‑140 (MQ=255)
                    tatTTACAAGGAAGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCg                                                                                                              >  2:259666/1‑140 (MQ=255)
                     atTTACAAGGAAGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAaga                                                                                                                    >  2:384203/1‑133 (MQ=255)
                     atTTACAAGGAAGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAaga                                                                                                                    <  1:384203/133‑1 (MQ=255)
                     atTTACAAGGAAGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGt                                                                                                             >  2:958812/1‑140 (MQ=255)
                      tttACAAGGAAGCGAAGACTCACATGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTg                                                                                                            >  2:442587/1‑140 (MQ=255)
                       ttACAAGGAAGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGa                                                                                                           <  1:82010/140‑1 (MQ=255)
                        tACAAGGAAGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGaa                                                                                                          <  2:663661/140‑1 (MQ=255)
                          cAAGGAAGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGc                                                                                                        >  1:304005/1‑140 (MQ=255)
                             ggAAGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGa                                                                                                     >  2:299883/1‑140 (MQ=255)
                             ggAAGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGa                                                                                                     >  2:968863/1‑140 (MQ=255)
                               aaGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAg                                                                                                         >  1:342862/1‑134 (MQ=255)
                               aaGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAg                                                                                                         <  2:342862/134‑1 (MQ=255)
                                aGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTc                                                                                                  >  2:214563/1‑140 (MQ=255)
                                aGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTc                                                                                                  >  2:153000/1‑140 (MQ=255)
                                aGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTc                                                                                                  >  2:208250/1‑140 (MQ=255)
                                aGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTc                                                                                                  >  1:298702/1‑140 (MQ=255)
                                aGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTc                                                                                                  >  1:308485/1‑140 (MQ=255)
                                aGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTc                                                                                                  >  1:364916/1‑140 (MQ=255)
                                aGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTc                                                                                                  >  1:733254/1‑140 (MQ=255)
                                 gCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTca                                                                                                 <  2:1058436/140‑1 (MQ=255)
                                   gAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTcaca                                                                                               <  2:733254/140‑1 (MQ=255)
                                         tCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTAc                                                                                         >  2:85075/1‑140 (MQ=255)
                                           acaAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACa                                                                                        <  1:878296/139‑1 (MQ=255)
                                           acaAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACa                                                                                        >  2:878296/1‑139 (MQ=255)
                                                   cTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGata                                                                               >  2:735303/1‑140 (MQ=255)
                                                       cGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAg                                                                           <  2:837587/140‑1 (MQ=255)
                                                         agaTATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGc                                                                         <  2:928653/140‑1 (MQ=255)
                                                          gaTATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCa                                                                        <  1:70972/140‑1 (MQ=255)
                                                            tatTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAAc                                                                      <  2:298702/140‑1 (MQ=255)
                                                            tatTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAAc                                                                      <  1:214563/140‑1 (MQ=255)
                                                                    tgtgCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGa                                                              >  1:493012/1‑140 (MQ=255)
                                                                       gCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATc                                                           >  1:323914/1‑140 (MQ=255)
                                                                            tGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTc                                                      <  2:493012/140‑1 (MQ=255)
                                                                                tGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGa                                                  >  1:677425/1‑140 (MQ=255)
                                                                                       ttcATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAg                                           >  2:1025311/1‑140 (MQ=255)
                                                                                        tcatcaTGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGa                                          >  2:550984/1‑140 (MQ=255)
                                                                                         catcatGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGaa                                         >  2:727952/1‑140 (MQ=255)
                                                                                            catGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACg                                      >  1:263014/1‑140 (MQ=255)
                                                                                            catGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACg                                      >  2:425153/1‑140 (MQ=255)
                                                                                              tGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTg                                    >  1:754156/1‑140 (MQ=255)
                                                                                                      gTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTGCACTTGGc                            <  1:299883/140‑1 (MQ=255)
                                                                                                      gTCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTGCACTTGGc                            >  1:688959/1‑140 (MQ=255)
                                                                                                       tCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTGCACTTGGCa                           >  2:298006/1‑140 (MQ=255)
                                                                                                       tCATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTGCACTTGGCa                           >  1:951624/1‑140 (MQ=255)
                                                                                                        cATGTTGTTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTGCACTTGGCAt                          <  1:550984/140‑1 (MQ=255)
                                                                                                          tgttgtTTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTGCACTTGGCATTg                        >  2:940452/1‑140 (MQ=255)
                                                                                                             tgttTTACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTGCACTTGGCATTGCTa                     <  1:735303/140‑1 (MQ=255)
                                                                                                                 ttACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTGCACTTGGCATTGCTACGGc                 >  1:51870/1‑140 (MQ=255)
                                                                                                                  tACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTGCACTTGGCATTGCTACGGCa                <  1:229028/140‑1 (MQ=255)
                                                                                                                  tACAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTGCACTTGGCATTGCTACGGCa                <  2:951624/140‑1 (MQ=255)
                                                                                                                    cAGCATCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTGCACTTGGCATTGCTACGGCAGt              <  1:153000/140‑1 (MQ=255)
                                                                                                                        aTCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTGCACTTGGCATTGCTACGGCAGTGCtt          <  2:263014/140‑1 (MQ=255)
                                                                                                                        aTCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTGCACTTGGCATTGCTACGGCAGTGCtt          <  1:85075/140‑1 (MQ=255)
                                                                                                                         tCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTGCACTTGGCATTGCTACGGCAGTGCttt         >  2:669628/1‑140 (MQ=255)
                                                                                                                         tCCATTGGTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTGCACTTGGCATTGCTACGGCAGTGCttt         >  2:615735/1‑140 (MQ=255)
                                                                                                                                gTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTGCACTTGGCATTGCTACGGCAGTGCTTTGTATACa  <  2:304005/140‑1 (MQ=255)
                                                                                                                                gTCACTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTGCACTTGGCATTGCTACGGCAGTGCTTTGTATACa  <  1:958812/140‑1 (MQ=255)
                                                                                                                                   aCTGCAGCATTCTCCACTCAAGGGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTGCACTTGGCATTGCTACGGCAGTGCTTTGtata    <  2:621041/135‑1 (MQ=255)
                                                                                                                                   aCTGCAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTGCACTTGGCATTGCTACGGCAGTGCTTTGtata    <  2:574218/135‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                     
AATGTCCCAAGCCAGAAGCATATTTACAAGGAAGCGAAGACTCACAAGTTGCTAGCGAGATATTTCTTTGTGCTATTGCTTGGATTCTTCATCATGAAATAAGTCATGTTGTTTTACAGCATCCATTGGTCACTACAGCATTCTCCACTCAAGAGGAGCGTGAAGCAGATTCACATGCTACAAAATGGATATTAGGCAACCTGTATGAATCCGCTCCTGAATTAAAGAAACGTGCACTTGGCATTGCTACGGCAGTGCTTTGTATACA  >  NC_000913/1199080‑1199347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A