Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F28 I1 R1
|
138 |
62.6 |
2119710 |
99.4% |
2106991 |
138.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,367,550 |
T→C |
G160G (GGT→GGC) |
arnC → |
undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,367,550 | 0 | T | C | 100.0%
| 89.2
/ NA
| 25 | G160G (GGT→GGC) | arnC | undecaprenyl‑phosphate 4‑deoxy‑4‑formamido‑L‑arabinose transferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (15/10); total (15/10) |
AAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAG > NC_000913/2367415‑2367682
|
aaaaGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGCTGTa < 2:21551/140‑1 (MQ=255)
cGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGCTGTAtgctgc > 2:850493/1‑140 (MQ=255)
gTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTAt < 1:435233/140‑1 (MQ=255)
cgacgTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTATCGcc < 1:850493/140‑1 (MQ=255)
ggTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTATCGCCGTCata < 1:42754/140‑1 (MQ=255)
ggTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTATCGCCGTCata > 1:521613/1‑140 (MQ=255)
ggTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTATCGCCGTCata > 2:398489/1‑140 (MQ=255)
tGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgatg > 2:79575/1‑140 (MQ=255)
tGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgatg < 2:521613/140‑1 (MQ=255)
tGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgatg > 2:435361/1‑140 (MQ=255)
tGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgatg > 1:330832/1‑140 (MQ=255)
tACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgatgcg > 1:195127/1‑140 (MQ=255)
aaCCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCTCCACTGGCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCa < 1:433613/140‑1 (MQ=255)
aaCCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCa < 1:435361/140‑1 (MQ=255)
aGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCAt < 2:5222/140‑1 (MQ=255)
tGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACgcag < 2:195127/140‑1 (MQ=255)
cTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGAtt < 2:330832/140‑1 (MQ=255)
cTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTcgcccg > 2:343453/1‑140 (MQ=255)
cTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTcgcccg > 2:512360/1‑140 (MQ=255)
ttATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGATCGCAGCACCTTTATCCCGATTCTGGCGAATATCTTcgcccgc > 2:728547/1‑140 (MQ=255)
cgcACCACTGGCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCAt > 2:1051336/1‑140 (MQ=255)
cgcACCACTGGCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCAt > 2:420392/1‑140 (MQ=255)
gcACCACTGGCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCAtt > 1:794107/1‑140 (MQ=255)
cccacGGGAAAGGCGAGGGGTGATTCCGGCTGTATGCTGCGCGCCTATCGCCGTAATTTTGTCGATGCGATGTTGCACTGCCATGACCGCACCCCTTTTACCCCGTTTCGGGCAAATTTCTTCGCCCGCCGTGCCATTGa < 2:836255/139‑1 (MQ=255)
gCAAAGCGATGGGTGATTACGGCTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCa > 1:472183/1‑140 (MQ=255)
aTTACGGCTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAg > 1:511175/1‑140 (MQ=255)
|
AAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAG > NC_000913/2367415‑2367682
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
