Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 138 62.6 2119710 99.4% 2106991 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,763,601 T→C Y518C (TAT→TGT)  abpA ← CP4‑57 prophage; anti‑bacteriophage protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,763,6010TC100.0% 242.4 / NA 65Y518C (TAT→TGT) abpACP4‑57 prophage; anti‑bacteriophage protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (34/31);  total (34/31)

CCGCAAACAGATAATTGAACGATGAGAAGTCCTCACCCTGCAGGCTATGTTTCGCCTGTTCATAGATCTCTGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGATAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCATCCTCGAACCCCGGCGTTTCAGGCTCGGTTAGTAGAT  >  NC_000913/2763465‑2763736
                                                                                                                                        |                                                                                                                                       
ccGCAAACAGATAATTGAACGATGAGAAGTCCTCACCCTGCAGGCTATGTTTCGCCTGTTCATAGATCTCTGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACaaa                                                                                                                                      >  2:919515/1‑140 (MQ=255)
   cAAACAGATAATTGAACGATGAGAAGTCCTCACCCTGCAGGCTATGTTTCGCCTGTTCATAGATCTCTGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGa                                                                                                                                   >  1:305650/1‑140 (MQ=255)
    aaaCAGATAATTGAACGATGAGAAGTCCTCACCCTGCAGGCTATGTTTCGCCTGTTCATAGATCTCTGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGaa                                                                                                                                  <  2:711183/140‑1 (MQ=255)
                 aaCGATGAGAAGTCCTCACCCTGCAGGCTATGTTTCGCCTGTTCATAGATCTCTGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCaa                                                                                                                     >  2:424253/1‑140 (MQ=255)
                  aCGATGAGAAGTCCTCACCCTGCAGGCTATGTTTCGCCTGTTCATAGATCTCTGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCaaa                                                                                                                    >  1:587499/1‑140 (MQ=255)
                     aTGAGAAGTCCTCACCCTGCAGGCTATGTTTCGCCTGTTCATAGATCTCTGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGAt                                                                                                                 <  1:919515/140‑1 (MQ=255)
                          aaGTCCTCACCCTGCAGGCTATGTTTCGCCTGTTCATAGATCTCTGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCa                                                                                                            <  2:587499/140‑1 (MQ=255)
                               cTCACCCTGCAGGCTATGTTTCGCCTGTTCATAGATCTCTGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACgg                                                                                                       >  2:931433/1‑140 (MQ=255)
                                       gCAGGCTATGTTTCGCCTGTTCATAGATCTCTGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAATACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCt                                                                                               >  2:603202/1‑140 (MQ=255)
                                       gCAGGCTATGTTTCGCCTGTTCATAGATCTCTGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCt                                                                                               >  2:346261/1‑140 (MQ=255)
                                       gCAGGCTATGTTTCGCCTGTTCATAGATCTCTGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCt                                                                                               >  1:512454/1‑140 (MQ=255)
                                              aTGTTTCGCCTGTTCATAGATCTCTGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAg                                                                                        >  2:37222/1‑140 (MQ=255)
                                                gTTTCGCCTGTTCATAGATCTCTGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGt                                                                                      >  2:917968/1‑140 (MQ=255)
                                                gTTTCGCCTATTCATAGATCTCTGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGt                                                                                      >  2:686374/1‑140 (MQ=255)
                                                       cTGTTCATAGATCTCTGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCcgc                                                                               >  2:108630/1‑140 (MQ=255)
                                                         gTTCATAGATCTCTGTCATACAACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGa                                                                             >  1:622226/1‑140 (MQ=255)
                                                                 aTCTCTGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCg                                                                     <  2:305650/140‑1 (MQ=255)
                                                                 aTCTCTGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCg                                                                     <  1:686374/140‑1 (MQ=255)
                                                                   ctctGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGaa                                                                   <  1:45394/140‑1 (MQ=255)
                                                                     ctGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAAtttt                                                                        <  2:468141/133‑1 (MQ=255)
                                                                     ctGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAAtttt                                                                        >  1:468141/1‑133 (MQ=255)
                                                                         cATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCAc                                                             <  1:996608/140‑1 (MQ=255)
                                                                          aTACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCAcc                                                            <  1:24902/140‑1 (MQ=255)
                                                                             cGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAATACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCt                                                         <  1:603202/140‑1 (MQ=255)
                                                                             cGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCt                                                         <  1:424253/140‑1 (MQ=255)
                                                                                ccTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGtt                                                      >  1:569562/1‑140 (MQ=255)
                                                                                ccTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGtt                                                      >  1:117543/1‑140 (MQ=255)
                                                                                ccTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGtt                                                      >  1:307787/1‑140 (MQ=255)
                                                                                ccTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGtt                                                      >  2:137066/1‑140 (MQ=255)
                                                                                   ctctcACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGtttct                                                   >  2:654866/1‑140 (MQ=255)
                                                                                    tctcACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGtttctt                                                  >  1:1027685/1‑140 (MQ=255)
                                                                                       cACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTttctttct                                               <  2:512454/140‑1 (MQ=255)
                                                                                          cTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCa                                            >  2:562975/1‑140 (MQ=255)
                                                                                             ctcATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGtttctttc                                                >  1:108007/1‑133 (MQ=255)
                                                                                             ctcATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGtttctttc                                                <  2:108007/133‑1 (MQ=255)
                                                                                             ctcATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTtctc                                              <  1:200725/135‑1 (MQ=255)
                                                                                             ctcATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTtctc                                              >  2:200725/1‑135 (MQ=255)
                                                                                             ctcATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGt                                         <  2:1027685/140‑1 (MQ=255)
                                                                                             ctcATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGt                                         <  1:28426/140‑1 (MQ=255)
                                                                                             ctcATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGt                                         <  1:654866/140‑1 (MQ=255)
                                                                                              tcatcaACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTc                                        <  2:252086/140‑1 (MQ=255)
                                                                                               catcaACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCa                                       <  1:108630/140‑1 (MQ=255)
                                                                                               catcaACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCa                                       <  1:595204/140‑1 (MQ=255)
                                                                                                          tGGGTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCATCCTCGAAccc                            >  2:1029007/1‑140 (MQ=255)
                                                                                                             gTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTc                                        <  2:343528/125‑1 (MQ=255)
                                                                                                             gTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTc                                        >  1:343528/1‑125 (MQ=255)
                                                                                                             gTTAACCGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCCCCAGGTCATCCTCGAACCCCgg                         <  1:346261/140‑1 (MQ=255)
                                                                                                                  ccGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCATCCTCGAACCCCGGCGttt                    <  2:569562/140‑1 (MQ=255)
                                                                                                                  ccGCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCATCCTCGAACCCCGGCGttt                    >  2:590683/1‑140 (MQ=255)
                                                                                                                    gCTCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCATCCTCGAACCCCGGCGTTTCa                  >  2:638468/1‑140 (MQ=255)
                                                                                                                      tCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCATCCTCGAACCCCGGCGTTTCAgg                >  2:681870/1‑140 (MQ=255)
                                                                                                                      tCAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCATCCTCGAACCCCGGCGTTTCAgg                >  1:85999/1‑140 (MQ=255)
                                                                                                                       cAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCATCCTCGAACCCCGGCGTTTCAGGc               <  1:590683/140‑1 (MQ=255)
                                                                                                                       cAAGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCATCCTCGAACCCCGGCGTTTCAGGc               >  2:78017/1‑140 (MQ=255)
                                                                                                                        aaGACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCATCCTCGAACCCCGGCGTTTCAGGCt              <  1:78017/140‑1 (MQ=255)
                                                                                                                          gACTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCATCCTCGAACCCCGGCGTTTCAGGCTCg            <  1:344205/140‑1 (MQ=255)
                                                                                                                            cTCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCATCCTCGAACCCCGGCGTTTCAGGCTCGGt          <  1:931433/140‑1 (MQ=255)
                                                                                                                             tCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCATCCTCGAACCCCGGCGTTTCAGGc               <  2:579011/134‑1 (MQ=255)
                                                                                                                             tCGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCATCCTCGAACCCCGGCGTTTCAGGc               >  1:579011/1‑134 (MQ=255)
                                                                                                                              cGGGGCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCATCCTCGAACCCCGGCGTTTCAGGCTCGGTta        <  2:117543/140‑1 (MQ=255)
                                                                                                                               ggggCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCGAGGTCATCCTCGAACCCCGGCGTTTCAGGCTCGGTtag       <  2:622226/140‑1 (MQ=255)
                                                                                                                               ggggCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCATCCTCGAACCCCGGCGTTTCAGGCTCGGTtag       >  2:347106/1‑140 (MQ=255)
                                                                                                                               ggggCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCATCCTCGAACCCCGGCGTTTCAGGCTCGGTtag       <  1:562975/140‑1 (MQ=255)
                                                                                                                                gggCTGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGGGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCATCCTCGAACCCCGGCGTTTCAGGCTCGGTtagt      >  1:1038072/1‑140 (MQ=255)
                                                                                                                                    tGGACAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCATCCTCGAACCCCGGCGTTTCAGGCTCGGTTAGTAGAt  >  1:427776/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                       
CCGCAAACAGATAATTGAACGATGAGAAGTCCTCACCCTGCAGGCTATGTTTCGCCTGTTCATAGATCTCTGTCATACGACCTCTCTCACCTTCTCATCAACTAATTGGGTTAACCGCTCAAGACTCGGGGCTGGATAAATGAATACGTGGATGCAAAGATTCGCAAACGGCGAATCCTCGATGAGGTCAGCCGCGAATTTTTCGAACAGCACCGCTGTTTCTTTCTCCAGGTCATCCTCGAACCCCGGCGTTTCAGGCTCGGTTAGTAGAT  >  NC_000913/2763465‑2763736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A