Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	162	93.0	3098984	99.0%	3067994	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	857,914	(T)_5→4	coding (1148/1266 nt)	ybiU ←	DUF1479 domain‑containing protein YbiU

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	857,910	0	T	.	100.0%	522.9 / NA	119	coding (1152/1266 nt)	ybiU	DUF1479 domain‑containing protein YbiU
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (60/59); total (60/59)

Only 100 of 127 total aligned reads displayed.

CATCAATTCACTTCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCCTTTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCAACGGAATGGATGACGTCGCAGT  >  NC_000913/857773‑858043

caTCAATTCACTTCCATTAATTCTCAAACATCCATGCCCAAGGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCCttt                                                                                                                                     >  1:1076122/1‑140 (MQ=255)

caTCAATTCACTTCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCCttt                                                                                                                                     >  1:1202597/1‑140 (MQ=255)

 aTCAATTCACTTCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCCtttt                                                                                                                                    >  2:1312895/1‑140 (MQ=255)

    aaTTCACTTCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCCttttcca                                                                                                                                 <  1:706735/140‑4 (MQ=255)

     aTTCACTTCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCCttttccag                                                                                                                                >  1:1214597/1‑136 (MQ=255)

       tCACTTCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTg                                                                                                                             <  2:1278705/140‑1 (MQ=255)

       tCACTTCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTg                                                                                                                             <  1:791978/140‑1 (MQ=255)

       tCACTTCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTg                                                                                                                             <  1:734306/140‑1 (MQ=255)

       tCACTTCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTg                                                                                                                             <  1:660620/140‑1 (MQ=255)

       tCACTTCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTg                                                                                                                             <  1:424463/140‑1 (MQ=255)

       tCACTTCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTg                                                                                                                             <  1:231780/140‑1 (MQ=255)

        cACTTCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGc                                                                                                                            <  1:1001760/140‑1 (MQ=255)

        cACTTCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGc                                                                                                                            <  1:585561/140‑1 (MQ=255)

          cTTCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCgg                                                                                                                          <  1:251613/140‑1 (MQ=255)

           ttCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGc                                                                                                                         >  1:881005/1‑140 (MQ=255)

           ttCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGc                                                                                                                         >  1:914353/1‑140 (MQ=255)

             ccATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCt                                                                                                                       >  1:1473069/1‑140 (MQ=255)

               aTTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTc                                                                                                                     <  1:911553/140‑1 (MQ=255)

                ttAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCa                                                                                                                    <  2:1492346/140‑1 (MQ=255)

                ttAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCa                                                                                                                    >  2:1418059/1‑140 (MQ=255)

                     tctcAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTtg                                                                                                               >  2:974536/1‑140 (MQ=255)

                      ctcAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTtgt                                                                                                              <  1:1381316/140‑1 (MQ=255)

                       tcAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTtgtg                                                                                                             >  1:187927/1‑140 (MQ=255)

                        cAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTgc                                                                                                            >  1:1386116/1‑140 (MQ=255)

                          aaCATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTgcgc                                                                                                          >  2:673591/1‑140 (MQ=255)

                              tCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAg                                                                                                      >  2:1192004/1‑140 (MQ=255)

                              tCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAg                                                                                                      >  2:208991/1‑140 (MQ=255)

                              tCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAg                                                                                                      >  2:807602/1‑140 (MQ=255)

                               ccATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAgg                                                                                                     >  1:1530649/1‑140 (MQ=255)

                                 aTGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCa                                                                                                   >  1:334590/1‑140 (MQ=255)

                                 aTGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCa                                                                                                   >  2:753265/1‑140 (MQ=255)

                                         cgctcgctTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGAttttt                                                                                           >  2:1477336/1‑140 (MQ=255)

                                         cgctcgctTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGAttttt                                                                                           >  2:1204091/1‑140 (MQ=255)

                                         cgctcgctTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGAttttt                                                                                           >  2:1428420/1‑140 (MQ=255)

                                         cgctcgctTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGAttttt                                                                                           >  1:485473/1‑140 (MQ=255)

                                           ctcgctTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTtct                                                                                         >  1:927758/1‑140 (MQ=255)

                                           ctcgctTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTtct                                                                                         <  2:914353/140‑1 (MQ=255)

                                            tcgctTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTtctc                                                                                        >  1:196849/1‑140 (MQ=255)

                                            tcgctTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTtctc                                                                                        >  1:1297020/1‑140 (MQ=255)

                                               ctTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGca                                                                                     >  2:307330/1‑140 (MQ=255)

                                                   ccGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATc                                                                                 >  1:1065704/1‑140 (MQ=255)

                                                    cGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCg                                                                                <  1:433281/140‑1 (MQ=255)

                                                     gTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCgg                                                                               <  2:1207962/140‑1 (MQ=255)

                                                     gTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCgg                                                                               >  2:643341/1‑140 (MQ=255)

                                                     gTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCgg                                                                               <  2:1473069/140‑1 (MQ=255)

                                                     gTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCgg                                                                               >  2:508711/1‑140 (MQ=255)

                                                     gTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCgg                                                                               <  2:798190/140‑1 (MQ=255)

                                                      tGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGt                                                                              >  2:651741/1‑140 (MQ=255)

                                                        aaTGTTGAGGTCGGTAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGc                                                                            >  2:760960/1‑140 (MQ=255)

                                                        aaTGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGc                                                                            <  2:1202597/140‑1 (MQ=255)

                                                        aaTGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGc                                                                            >  2:743884/1‑140 (MQ=255)

                                                        aaTGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGc                                                                            <  1:208991/140‑1 (MQ=255)

                                                        aaTGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCATCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGc                                                                            <  2:1076122/140‑1 (MQ=255)

                                                         aTGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGCTGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGcc                                                                           >  2:1396012/1‑140 (MQ=255)

                                                          tGTTGAGGTCGGCATGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCCCGCGCGGGAAGTCGCGCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTTACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCg                                                                          <  2:81139/140‑1 (MQ=255)

                                                          tGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCg                                                                          <  2:1058628/140‑1 (MQ=255)

                                                           gTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGTGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGc                                                                         <  1:188993/140‑1 (MQ=255)

                                                            ttGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCa                                                                        <  2:1532065/140‑1 (MQ=255)

                                                            ttGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCa                                                                        >  1:813442/1‑140 (MQ=255)

                                                            ttGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCa                                                                        <  1:1439411/140‑1 (MQ=255)

                                                             tGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAg                                                                       <  2:169566/140‑1 (MQ=255)

                                                               aGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGa                                                                     <  1:609764/140‑1 (MQ=255)

                                                                ggTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGaa                                                                    <  1:1418059/140‑1 (MQ=255)

                                                                    ggCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTa                                                                >  1:260965/1‑140 (MQ=255)

                                                                     gCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTAc                                                               <  1:1142844/140‑1 (MQ=255)

                                                                      cAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACa                                                              <  2:349741/140‑1 (MQ=255)

                                                                         gCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCa                                                           >  1:320038/1‑140 (MQ=255)

                                                                          cGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCAc                                                          <  1:499762/140‑1 (MQ=255)

                                                                           gTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACg                                                         <  1:126233/140‑1 (MQ=255)

                                                                           gTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACg                                                         <  2:1107810/140‑1 (MQ=255)

                                                                           gTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACg                                                         <  2:1243434/140‑1 (MQ=255)

                                                                            tAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGt                                                        <  1:88799/140‑1 (MQ=255)

                                                                                 cGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGccc                                                   <  2:556307/140‑1 (MQ=255)

                                                                                   tCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCa                                                 >  1:925676/1‑140 (MQ=255)

                                                                                    ccTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCaa                                                >  1:1107091/1‑140 (MQ=255)

                                                                                    ccTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCaa                                                >  1:957911/1‑140 (MQ=255)

                                                                                            gtttgtttCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCttgttg                                        <  2:73867/140‑1 (MQ=255)

                                                                                             tttgtttCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGa                                       <  1:983023/140‑1 (MQ=255)

                                                                                                  ttCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTc                                  >  1:530357/1‑140 (MQ=255)

                                                                                                  ttCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTc                                  >  1:822837/1‑140 (MQ=255)

                                                                                                      tAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACg                              >  1:859479/1‑140 (MQ=255)

                                                                                                        gTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACggg                            <  1:508711/140‑1 (MQ=255)

                                                                                                         tCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACgggg                           >  1:1026731/1‑140 (MQ=255)

                                                                                                         tCCTCGCGCGGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACgggg                           >  1:1322725/1‑140 (MQ=255)

                                                                                                             cgcgcgGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCaa                       >  2:480902/1‑140 (MQ=255)

                                                                                                             cgcgcgGGAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCaa                       >  2:98070/1‑140 (MQ=255)

                                                                                                                   ggAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCAACGGAAt                 >  2:1477995/1‑140 (MQ=255)

                                                                                                                   ggAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCAACGGAAt                 >  2:1173065/1‑140 (MQ=255)

                                                                                                                   ggAAGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCAACGGAAt                 >  1:693300/1‑140 (MQ=255)

                                                                                                                      aGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCAACGGAATGGa              <  1:1428420/140‑1 (MQ=255)

                                                                                                                      aGTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCAACGGAATGGa              <  2:485473/140‑1 (MQ=255)

                                                                                                                       gTCGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCAACGGAATGGAt             <  2:1297020/140‑1 (MQ=255)

                                                                                                                         cGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCAACGGAATGGATGa           <  2:1386116/140‑1 (MQ=255)

                                                                                                                         cGCCCGGCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCAACGGAATGGATGa           <  1:1204091/140‑1 (MQ=255)

                                                                                                                              ggCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCAACGGAATGGATGACGTCg      <  1:80486/140‑1 (MQ=255)

                                                                                                                              ggCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCAACGGAATGGATGACGTCg      <  2:334590/140‑1 (MQ=255)

                                                                                                                              ggCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCAACGGAATGGATGACGTCg      <  2:95026/140‑1 (MQ=255)

                                                                                                                               gCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCAACGGAATGGATGACGTCGc     <  1:974536/140‑1 (MQ=255)

                                                                                                                               gCGATGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCAACGGAATGGATGACGTCGc     <  1:743884/140‑1 (MQ=255)

                                                                                                                                  aTGCGCC‑TTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCAACGGAATGGATGACGTCGCAGt  >  2:1408769/1‑140 (MQ=255)

CATCAATTCACTTCCATTAATTCTCAAACATCCATGCCCAACGCTCGCTTACCGTGAATGTTGAGGTCGGCAAGCGTAAAGCGTCCTTCCCAGTTTGTTTCATAGTCCTCGCGCGGGAAGTCGCCCGGCGATGCGCCTTTTTCCAGTGCGGCCTTCACCTTGTGCGCGTAGGCAAGATTTTTCTCGCACATCGGTGCCGCAGGAATGTACATCACGTTGCCCCAACCTTGTTGATTTTCAACGGGGGCAACGGAATGGATGACGTCGCAGT  >  NC_000913/857773‑858043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A