Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 162 93.0 3098984 99.0% 3067994 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,883,729 C→T S181F (TCC→TTC)  yeaV → putative transporter YeaV

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,883,7290CT98.7% 267.5 / ‑4.3 78S181F (TCC→TTC) yeaVputative transporter YeaV
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base T (39/38);  total (40/38)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.79e-01

GATGTTCCTGATCGCCACTGTCGGCGCACTGACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTCCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAA  >  NC_000913/1883595‑1883864
                                                                                                                                      |                                                                                                                                       
gATGTTCCTGATCGCCACTGTCGGCGCACTGACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTcggcg                                                                                                                                    <  1:601697/140‑1 (MQ=255)
 aTGTTCCTGATCGCCCCTGTCGGCGCACTGACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTcggcgg                                                                                                                                   <  1:426660/140‑1 (MQ=255)
       cTGATCGCCACTGTCGGCGCACTGACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCAtttt                                                                                                                             <  2:1030402/140‑1 (MQ=255)
       cTGATCGCCACTGTCGGCGCACTGACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCAtttt                                                                                                                             <  2:595287/140‑1 (MQ=255)
           tCGCCACTGTCGGCGCACTGACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGc                                                                                                                         >  2:1465101/1‑140 (MQ=255)
            cGCCACTGTCGGCGCACTGACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGcc                                                                                                                        >  2:457760/1‑140 (MQ=255)
             gCCACTGTCGGCGCACTGACCATTTCCCTTGTTGTTACCGCAGCAACCTTTGCCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCt                                                                                                                       <  1:174645/140‑1 (MQ=255)
              ccACTGTCGGCGCACTGACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTa                                                                                                                      >  1:216513/1‑140 (MQ=255)
                aCTGTCGGCGCACTGACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAg                                                                                                                    <  2:753740/140‑1 (MQ=255)
                 cTGTCGGCGCACTGACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGc                                                                                                                   >  1:685128/1‑140 (MQ=255)
                 cTGTCGGCGCACTGACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCA‑TTTTTGCCTAAGCt                                                                                                                  <  1:325967/140‑1 (MQ=255)
                   gTCGGCGCACTGACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTc                                                                                                                 <  1:429901/140‑1 (MQ=255)
                   gTCGGCGCACTGACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTc                                                                                                                 <  2:899753/140‑1 (MQ=255)
                      ggCGCACTGACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTg                                                                                                              <  1:1391547/140‑1 (MQ=255)
                        cgcACTGACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGa                                                                                                            <  2:1430060/140‑1 (MQ=255)
                        cgcACTGACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGa                                                                                                            <  1:916822/140‑1 (MQ=255)
                            cTGACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTgg                                                                                                        >  2:1336053/1‑140 (MQ=255)
                             tGACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGt                                                                                                       <  1:120513/140‑1 (MQ=255)
                              gACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTa                                                                                                      >  2:1036992/1‑140 (MQ=255)
                              gACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTa                                                                                                      >  1:1158082/1‑140 (MQ=255)
                              gACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTa                                                                                                      >  1:89577/1‑140 (MQ=255)
                              gACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTa                                                                                                      >  2:1480080/1‑140 (MQ=255)
                                         ttgttgTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGt                                                                                           >  1:975343/1‑140 (MQ=255)
                                           gttgttACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGttt                                                                                         >  1:720697/1‑140 (MQ=255)
                                              gttACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCa                                                                                      >  1:154189/1‑140 (MQ=255)
                                                     cagcaACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACTGTTTGCAACGTCTg                                                                               >  2:862730/1‑140 (MQ=255)
                                                          aCCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCaa                                                                          >  1:398769/1‑140 (MQ=255)
                                                              ttACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATg                                                                      <  2:1056441/140‑1 (MQ=255)
                                                                     tGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCt                                                               >  1:1324342/1‑140 (MQ=255)
                                                                     tGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCt                                                               >  1:1304044/1‑140 (MQ=255)
                                                                      gggCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTg                                                              >  2:832117/1‑140 (MQ=255)
                                                                      gggCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTg                                                              >  1:335633/1‑140 (MQ=255)
                                                                      gggCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCAAAACTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTg                                                              >  2:903894/1‑140 (MQ=255)
                                                                         cTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTgggg                                                           <  1:1480080/140‑1 (MQ=255)
                                                                           ttCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGgcg                                                         <  2:562983/140‑1 (MQ=255)
                                                                            tCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGgcgc                                                        >  2:1131773/1‑140 (MQ=255)
                                                                            tCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGgcgc                                                        >  2:795978/1‑140 (MQ=255)
                                                                                  cTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCct                                                  <  1:1336053/140‑1 (MQ=255)
                                                                                  cTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCct                                                  <  1:769383/140‑1 (MQ=255)
                                                                                  cTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCct                                                  >  1:549006/1‑140 (MQ=255)
                                                                                     aCCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCctgct                                               >  2:362879/1‑140 (MQ=255)
                                                                                        ggTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGcc                                            <  1:905505/140‑1 (MQ=255)
                                                                                          tttACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCAt                                          <  1:267724/140‑1 (MQ=255)
                                                                                             aCCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTAc                                       <  1:53062/140‑1 (MQ=255)
                                                                                              cccGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACt                                      <  1:457760/140‑1 (MQ=255)
                                                                                              cccGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGATTGGCTGGGGCGCGTTCCTGCTGCCATTACt                                      <  1:862730/140‑1 (MQ=255)
                                                                                               ccGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTg                                     >  2:155689/1‑140 (MQ=255)
                                                                                               ccGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTg                                     <  2:1410101/140‑1 (MQ=255)
                                                                                                   tAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGc                                 >  2:789141/1‑140 (MQ=255)
                                                                                                    aaCTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCt                                <  2:720697/140‑1 (MQ=255)
                                                                                                    aaCTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCt                                >  1:655948/1‑140 (MQ=255)
                                                                                                    aaCTTCACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCt                                <  1:1549432/140‑1 (MQ=255)
                                                                                                         cACCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTg                           >  1:1129073/1‑140 (MQ=255)
                                                                                                          aCCGTGCAGGCATTTGTGGTCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGt                          <  2:975343/140‑1 (MQ=255)
                                                                                                          aCCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGt                          <  1:1465101/140‑1 (MQ=255)
                                                                                                          aCCGTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGt                          <  2:474351/140‑1 (MQ=255)
                                                                                                             gTGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCgg                       <  2:1153042/140‑1 (MQ=255)
                                                                                                             gTGCAGGCATTTGTGATCCTGCTTTCCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCgg                       >  1:601260/1‑140 (MQ=255)
                                                                                                              tGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGc                      >  1:1400954/1‑140 (MQ=255)
                                                                                                              tGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGc                      >  1:1443173/1‑140 (MQ=255)
                                                                                                              tGCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGc                      >  2:469778/1‑140 (MQ=255)
                                                                                                               gCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGcc                     <  1:1036992/140‑1 (MQ=255)
                                                                                                               gCAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGcc                     <  2:89577/140‑1 (MQ=255)
                                                                                                                cAGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGccc                    >  1:1547329/1‑140 (MQ=255)
                                                                                                                 aGGCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCa                   >  2:407090/1‑140 (MQ=255)
                                                                                                                   gCATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAAc                 >  2:691531/1‑140 (MQ=255)
                                                                                                                    cATTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAAcc                <  2:830947/140‑1 (MQ=255)
                                                                                                                     aTTTGTGATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCg               <  2:890448/140‑1 (MQ=255)
                                                                                                                        tgtgATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAAt            <  2:1180491/140‑1 (MQ=255)
                                                                                                                        tgtgATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAAt            >  2:162653/1‑140 (MQ=255)
                                                                                                                        tgtgATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAAt            >  2:1236702/1‑140 (MQ=255)
                                                                                                                           gATCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATtta         <  2:1403009/140‑1 (MQ=255)
                                                                                                                            aTCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATttat        <  1:795978/140‑1 (MQ=255)
                                                                                                                            aTCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATttat        >  1:782190/1‑140 (MQ=255)
                                                                                                                             tCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATttatt       <  1:607570/140‑1 (MQ=255)
                                                                                                                             tCCTGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATttatt       >  1:1207744/1‑140 (MQ=255)
                                                                                                                                tGCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTAcc    <  2:1324342/140‑1 (MQ=255)
                                                                                                                                 gCTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCa   <  2:15550/140‑1 (MQ=255)
                                                                                                                                 gCTTTTCGGCGGCATTTTTTGCCTAAGCTCGCGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCTGCCCAACCGAATTTATTACCa   >  1:934443/1‑140 (MQ=255)
                                                                                                                                 gCTTTTCGGCCGCATTTTTAACCTAAGCTGGTGGATTGGTATCAACAACGGTTTGCAAGGATCATTCAAAATGGTTGGCTGGGTCGAGCTCCTGCTGCCATTACTGGAGCTAATTGTCGGCCCAACCGAATTTATTACCa   >  2:902367/1‑140 (MQ=255)
                                                                                                                                  cTTTTCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCaa  >  2:1309034/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                       
GATGTTCCTGATCGCCACTGTCGGCGCACTGACCATTTCCCTTGTTGTTACCGCAGCAACCTTTACCCGTGGGCTTTCCGCGCTGACCGGTTTACCCGATAACTTCACCGTGCAGGCATTTGTGATCCTGCTTTCCGGCGGCATTTTTTGCCTAAGCTCGTGGATTGGTATCAACAACGGTTTGCAACGTCTGAGCAAAATGGTTGGCTGGGGCGCGTTCCTGCTGCCATTACTGGTGCTGATTGTCGGCCCAACCGAATTTATTACCAA  >  NC_000913/1883595‑1883864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A