Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F28 I1 R1	162	93.0	3098984	99.0%	3067994	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,087,633	G→A	T209M (ACG→ATG)	yeeY ←	putative DNA‑binding transcriptional regulator YeeY

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,087,633	0	G	A	100.0%	326.9 / NA	91	T209M (ACG→ATG)	yeeY	putative DNA‑binding transcriptional regulator YeeY
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (40/51); total (40/51)

CGCGCCACTATCGAGAAAACGTTGCGCCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCGTAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAA  >  NC_000913/2087497‑2087769

cgcgCCACTATCGAGAAAACGTTGCGCCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAg                                                                                                                                       >  2:599386/1‑140 (MQ=255)

  cgcCACTATCGAGAAAACGTTGCGCCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGaa                                                                                                                                     >  2:288446/1‑140 (MQ=255)

    ccACTATCGAGAAAACGTTGCGCCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAgc                                                                                                                                   >  1:289719/1‑140 (MQ=255)

    ccACTATCGAGAAAACGTTGCGCCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAgc                                                                                                                                   >  2:391253/1‑140 (MQ=255)

     cACTATCGAGAAAACGTTGCGCCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAgcg                                                                                                                                  <  2:489227/140‑1 (MQ=255)

       cTATCGAGAAAACGTTGCGCCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCgcc                                                                                                                                <  1:701802/140‑1 (MQ=255)

       cTATCGAGAAAACGTTGCGCCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCgcc                                                                                                                                <  1:608343/140‑1 (MQ=255)

          tCGAGAAAACGTTGCGCCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCgcctgc                                                                                                                             <  2:333206/140‑1 (MQ=255)

             agaAAACGTTGCGCCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGcctgcctg                                                                                                                          >  2:496213/1‑140 (MQ=255)

               aaaaCGTTGCGCCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTgcg                                                                                                                        >  2:191216/1‑140 (MQ=255)

               aaaaCGTTGCGCCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTgcg                                                                                                                        <  1:654960/140‑1 (MQ=255)

                 aaCGTTGCGCCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCa                                                                                                                      >  2:1071672/1‑140 (MQ=255)

                 aaCGTTGCGCCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCa                                                                                                                      <  1:76118/140‑1 (MQ=255)

                 aaCGTTGCGCCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCa                                                                                                                      <  1:228545/140‑1 (MQ=255)

                  aCGTTGCGCCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAg                                                                                                                     >  1:1423662/1‑140 (MQ=255)

                  aCGTTGCGCCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAg                                                                                                                     <  2:525305/140‑1 (MQ=255)

                  aCGTTGCGCCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAg                                                                                                                     >  1:853706/1‑140 (MQ=255)

                    gTTGCGCCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTa                                                                                                                   <  1:660769/140‑1 (MQ=255)

                      tGCGCCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATc                                                                                                                 >  1:1354906/1‑140 (MQ=255)

                       gcgcCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGTAGTATcc                                                                                                                <  2:1328605/140‑1 (MQ=255)

                       gcgcCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATcc                                                                                                                <  2:797765/140‑1 (MQ=255)

                       ccgcCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATcc                                                                                                                <  1:1011632/139‑1 (MQ=255)

                             gATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCCGCGCAGTATCCCccacc                                                                                                          >  2:810812/1‑140 (MQ=255)

                                 aCGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACaa                                                                                                      <  1:496213/140‑1 (MQ=255)

                                 aCGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACaa                                                                                                      <  2:621895/140‑1 (MQ=255)

                                  cGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAAt                                                                                                     >  2:231770/1‑140 (MQ=255)

                                     ggTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGc                                                                                                  >  1:571763/1‑140 (MQ=255)

                                      gTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGcc                                                                                                 <  1:433304/140‑1 (MQ=255)

                                        aaaTAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATcc                                                                                                                <  2:1320110/123‑1 (MQ=255)

                                        aaaTAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATcc                                                                                                                >  1:1320110/1‑123 (MQ=255)

                                        aaaTAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCg                                                                                               >  1:1207419/1‑140 (MQ=255)

                                        aaaTAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCg                                                                                               >  1:976138/1‑140 (MQ=255)

                                        aaaTAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCg                                                                                               >  1:713444/1‑140 (MQ=255)

                                         aaTAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGa                                                                                              >  2:1350577/1‑140 (MQ=255)

                                         aaTAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGa                                                                                              <  2:1096848/140‑1 (MQ=255)

                                           tAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGata                                                                                            <  2:289719/140‑1 (MQ=255)

                                           tAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGata                                                                                            <  2:1342307/140‑1 (MQ=255)

                                           tAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGata                                                                                            <  1:188063/140‑1 (MQ=255)

                                            aGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGatat                                                                                           <  2:1366064/140‑1 (MQ=255)

                                              ccGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGATGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCg                                                                                         <  2:74367/140‑1 (MQ=255)

                                              ccGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCg                                                                                         <  2:767619/140‑1 (MQ=255)

                                               cGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGc                                                                                        >  2:39935/1‑140 (MQ=255)

                                                gCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGTTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCt                                                                                       <  2:1541694/140‑1 (MQ=255)

                                                gCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCt                                                                                       <  1:599386/140‑1 (MQ=255)

                                                 cAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCtt                                                                                      >  1:206402/1‑140 (MQ=255)

                                                   gCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTtaa                                                                                    >  2:648702/1‑140 (MQ=255)

                                                       aGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTaataat                                                                                >  2:1462084/1‑140 (MQ=255)

                                                         gCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATac                                                                              >  2:28535/1‑140 (MQ=255)

                                                         gCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATac                                                                              <  2:422565/140‑1 (MQ=255)

                                                            gCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATacgac                                                                           <  2:1321954/140‑1 (MQ=255)

                                                             cTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATacgacg                                                                          >  1:177672/1‑140 (MQ=255)

                                                                   tGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTaa                                                                    <  1:1238331/140‑1 (MQ=255)

                                                                     cAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACg                                                                  >  2:241954/1‑140 (MQ=255)

                                                                        cTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGct                                                               <  1:1014768/140‑1 (MQ=255)

                                                                          ccAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGctct                                                             >  1:411438/1‑140 (MQ=255)

                                                                          ccAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGctct                                                             >  2:426412/1‑140 (MQ=255)

                                                                          ccAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGctct                                                             >  1:913007/1‑140 (MQ=255)

                                                                            aGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCtcttc                                                           >  1:1201541/1‑140 (MQ=255)

                                                                                tGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTcc                                                       >  1:242879/1‑140 (MQ=255)

                                                                                 ggTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCa                                                      <  1:819548/140‑1 (MQ=255)

                                                                                  gTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAg                                                     >  1:939265/1‑140 (MQ=255)

                                                                                    tttAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAggg                                                   <  1:1306002/140‑1 (MQ=255)

                                                                                    tttAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAggg                                                   <  1:1350577/140‑1 (MQ=255)

                                                                                      tAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCt                                                 <  2:853706/140‑1 (MQ=255)

                                                                                      tAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCCGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCt                                                 <  1:810812/140‑1 (MQ=255)

                                                                                       aaaaTCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTa                                                <  2:206402/140‑1 (MQ=255)

                                                                                       aaaaTCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTa                                                >  2:1036429/1‑140 (MQ=255)

                                                                                       aaaaTCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTa                                                >  2:1400326/1‑140 (MQ=255)

                                                                                        aaaTCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTaa                                               >  2:856643/1‑140 (MQ=255)

                                                                                         aaTCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAAc                                              <  2:1207419/140‑1 (MQ=255)

                                                                                           tCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACgg                                            <  2:1171106/140‑1 (MQ=255)

                                                                                             gAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACGgat                                          <  2:571763/140‑1 (MQ=255)

                                                                                                     tAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGgc                                  >  2:984583/1‑140 (MQ=255)

                                                                                                       aTGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGgcgc                                <  2:1006858/140‑1 (MQ=255)

                                                                                                         ggCTTCTTGTTCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGa                              <  1:1174434/140‑1 (MQ=255)

                                                                                                                  ttCGTCGAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGGCGATTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGa                     <  1:1462084/140‑1 (MQ=255)

                                                                                                                   tcgtcgAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGAc                    <  1:617732/140‑1 (MQ=255)

                                                                                                                   tcgtcgAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGAc                    <  2:976138/140‑1 (MQ=255)

                                                                                                                   tcgtcgAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGAc                    <  2:177672/140‑1 (MQ=255)

                                                                                                                   tcgtcgAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGAc                    <  1:241954/140‑1 (MQ=255)

                                                                                                                   tcgtcgAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGAc                    <  1:374395/140‑1 (MQ=255)

                                                                                                                   tcgtcgAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGAc                    <  1:39935/140‑1 (MQ=255)

                                                                                                                   tcgtcgAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGAc                    <  2:411438/140‑1 (MQ=255)

                                                                                                                    cgtcgAGAAGTTGTGATGCCATAGAAGTGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACt                   >  2:116884/1‑140 (MQ=255)

                                                                                                                    cgtcgAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACt                   >  2:287345/1‑140 (MQ=255)

                                                                                                                    cgtcgAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACt                   >  2:221709/1‑140 (MQ=255)

                                                                                                                    cgtcgAGAAGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACt                   >  2:162012/1‑140 (MQ=255)

                                                                                                                           aaGTTGTGATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCa            <  2:1423662/140‑1 (MQ=255)

                                                                                                                                gtgATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCg       >  1:1037329/1‑140 (MQ=255)

                                                                                                                                  gATGCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGcc     <  1:648702/140‑1 (MQ=255)

                                                                                                                                     gCCATAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCaa  <  1:984583/140‑1 (MQ=255)

CGCGCCACTATCGAGAAAACGTTGCGCCAGATAACGGGGTAAATAGCCGCAGCCGAGGCCGCTAATTTGCAGCTCCAGTTTGGTTTTAAAATCGAAAACGGTAATGGCTTCTTGTTCGTCGAGAAGTTGTGATGCCGTAGAAGCGCCTGCCTGCGCAGTATCCCCCACCACAATCGCCCGATATCGCTTAATAATACGACGATTTAACGGCTCTTCTTCCAGGGCTAACGGATGATGAGGCGCGACCGCAAAGACTTGTTCCAGATCGCCCAA  >  NC_000913/2087497‑2087769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A