Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F28 I1 R1	126	72.5	2472046	99.4%	2457213	138.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	468,892	A→G	S8G (AGC→GGC)	mdlA →	ABC transporter family protein MdlA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	468,892	0	A	G	100.0%	311.8 / NA	83	S8G (AGC→GGC)	mdlA	ABC transporter family protein MdlA
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (45/38); total (45/38)

AACAGCGTGCCGGGGCTGTCGGACGTCACTTCCAGCTTCGCGATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAAGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTCGATGGCGTGACAGAACAACACTTTACTA  >  NC_000913/468758‑469027

aaCAGCGTGCCGGGGCTGTCGGACGTCACTTCCAGCTTCGCGATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTgg                                                                                                                                     >  1:911305/1‑140 (MQ=255)

  cAGCGTGCCGGGGCTGTCGGACGTCACTTCCAGCTTCGCGATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTa                                                                                                                                   <  1:412214/140‑1 (MQ=255)

     cGTGCCGGGGCTGTCGGACGTCACTTCCAGCTTCGCGATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCt                                                                                                                                       <  2:23330/133‑1 (MQ=255)

     cGTGCCGGGGCTGTCGGACGTCACTTCCAGCTTCGCGATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCt                                                                                                                                       >  1:23330/1‑133 (MQ=255)

     cGTGCCGGGGCTGTCGGACGTCACTTCCAGCTTCGCGATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTAttt                                                                                                                                >  1:804862/1‑140 (MQ=255)

     cGTGCCGGGGCTGTCGGACGTCACTTCCAGCTTCGCGATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTAttt                                                                                                                                >  1:166618/1‑140 (MQ=255)

     cGTGCCGGGGCTGTCGGACGTCACTTCCAGCTTCGCGATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTAttt                                                                                                                                <  2:804862/140‑1 (MQ=255)

     cGTGCCGGGGCTGTCGGACGTCACTTCCAGCTTCGCGATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTAttt                                                                                                                                >  1:1020200/1‑140 (MQ=255)

       tGCCGGGGCTGTCGGACGTCACTTCCAGCTTCGCGATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTcc                                                                                                                              >  2:1096867/1‑140 (MQ=255)

                    ggACGTCACTTCCAGCTTCGCGATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCg                                                                                                                 <  2:473515/140‑1 (MQ=255)

                                cAGCTTCGCGATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCg‑g                                                                                                    >  2:681488/1‑140 (MQ=255)

                                  gCTTCGCGATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCg‑ggg                                                                                                  <  2:1020200/140‑1 (MQ=255)

                                   cTTCGCGATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGc                                                                                                 >  1:467989/1‑140 (MQ=255)

                                      cgcgATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGt                                                                                              >  2:58332/1‑140 (MQ=255)

                                      cgcgATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGt                                                                                              >  2:846244/1‑140 (MQ=255)

                                      cgcgATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGt                                                                                              >  2:771801/1‑140 (MQ=255)

                                       gcgATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTc                                                                                             >  1:419887/1‑140 (MQ=255)

                                        cgATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCg                                                                                            <  1:58815/140‑1 (MQ=255)

                                           tGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCct                                                                                         <  2:467989/140‑1 (MQ=255)

                                               aCAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCcttgct                                                                                     <  2:641037/140‑1 (MQ=255)

                                               aCAGATTAAATACACCACTTCTTTACCCATCGAATAAACATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCcttgct                                                                                     <  1:249849/140‑1 (MQ=255)

                                                   aTTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCct                                                                                         <  2:503277/132‑1 (MQ=255)

                                                   aTTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCct                                                                                         >  1:503277/1‑132 (MQ=255)

                                                          acacCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATcg                                                                          <  1:1096867/140‑1 (MQ=255)

                                                           caccacTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATcgc                                                                         <  2:259131/140‑1 (MQ=255)

                                                           caccacTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATcgc                                                                         >  2:613152/1‑140 (MQ=255)

                                                            accacTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATcgcg                                                                        >  2:46572/1‑140 (MQ=255)

                                                            accacTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATcgcg                                                                        >  1:271421/1‑140 (MQ=255)

                                                             ccacTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCcttgc                                                                                      <  2:1055570/125‑1 (MQ=255)

                                                             ccacTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCcttgc                                                                                      >  1:1055570/1‑125 (MQ=255)

                                                             ccacTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGa                                                                       >  2:686110/1‑140 (MQ=255)

                                                             ccacTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGa                                                                       >  1:295805/1‑140 (MQ=255)

                                                             ccacTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGa                                                                       >  1:362251/1‑140 (MQ=255)

                                                             ccacTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGa                                                                       >  1:729364/1‑140 (MQ=255)

                                                             ccacTTCGTTACCCATCGAATAAATATCCAGACTCACGTCAGGACACAACCCGTGCGATTATTTGCTCAACTAGGCTGGTATCCCCGTCGGGAATGGCGTCCCTATCTCG‑GCGCTGTCGCCTTGCTTGTCATTATCGCGa                                                                       <  2:732376/140‑1 (MQ=255)

                                                               acTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGAtg                                                                     <  2:295805/140‑1 (MQ=255)

                                                               acTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGAtg                                                                     <  2:166618/140‑1 (MQ=255)

                                                                   cttTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGTGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGAtgctgc                                                                 >  2:945466/1‑140 (MQ=255)

                                                                   cttTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGAtgctgc                                                                 >  1:47738/1‑140 (MQ=255)

                                                                           aTCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGtt                                                         >  1:479352/1‑140 (MQ=255)

                                                                           aTCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGtt                                                         >  1:1173467/1‑140 (MQ=255)

                                                                           aTCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGtt                                                         >  2:797935/1‑140 (MQ=255)

                                                                           aTCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGtt                                                         >  1:934412/1‑140 (MQ=255)

                                                                             cGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGAt                                                                      <  1:281727/125‑1 (MQ=255)

                                                                             cGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGAt                                                                      >  2:281727/1‑125 (MQ=255)

                                                                             cGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTcc                                                       >  1:145348/1‑140 (MQ=255)

                                                                                    atatCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCaaaa                                                <  1:613152/140‑1 (MQ=255)

                                                                                      atCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGt                                              <  1:686110/140‑1 (MQ=255)

                                                                                       tCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGtg                                             <  2:271421/140‑1 (MQ=255)

                                                                                         cAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGtggt                                           <  1:797935/140‑1 (MQ=255)

                                                                                            aaTCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGtggttgg                                        <  2:729364/140‑1 (MQ=255)

                                                                                              tcaggtcaggACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTa                                      <  1:46572/140‑1 (MQ=255)

                                                                                              tcaggtcaggACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTa                                      <  1:771801/140‑1 (MQ=255)

                                                                                              tcaggtcaggACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTACGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTa                                      >  2:341388/1‑140 (MQ=255)

                                                                                                aggtcaggACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTAtt                                    <  2:419887/140‑1 (MQ=255)

                                                                                                  gtcaggACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGtggt                                           <  2:894215/131‑1 (MQ=255)

                                                                                                  gtcaggACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGtggt                                           >  1:894215/1‑131 (MQ=255)

                                                                                                  gtcaggACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTAttgt                                  >  2:919557/1‑140 (MQ=255)

                                                                                                  gtcaggACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTAttgt                                  >  1:740983/1‑140 (MQ=255)

                                                                                                  gtcaggACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTAttgt                                  >  2:562771/1‑140 (MQ=255)

                                                                                                  gtcaggACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTAttgt                                  >  2:283403/1‑140 (MQ=255)

                                                                                                      ggACACAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTc                              <  1:681488/140‑1 (MQ=255)

                                                                                                        acacAACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTCGa                            <  2:934412/140‑1 (MQ=255)

                                                                                                           caACGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTCGATgg                         <  2:595345/140‑1 (MQ=255)

                                                                                                            aaCGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTCGATGGc                        >  2:151427/1‑140 (MQ=255)

                                                                                                            aaCGCGTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTCGATGGc                        >  2:834926/1‑140 (MQ=255)

                                                                                                            aaCGCGTGCGATTATTTGCTAAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTCGATGGc                        >  2:158700/1‑140 (MQ=255)

                                                                                                            aaCGCGTG‑GATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTc                              >  1:721383/1‑133 (MQ=255)

                                                                                                            aaCGCGTG‑GATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTc                              <  2:721383/133‑1 (MQ=255)

                                                                                                              cgcgTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTCGATGGCGt                      >  2:337609/1‑140 (MQ=255)

                                                                                                                cgTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTCGATGGCGTGa                    >  1:1233458/1‑140 (MQ=255)

                                                                                                                cgTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTCGATGGCGTGa                    <  2:740983/140‑1 (MQ=255)

                                                                                                                 gTGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTCGATGGCGTGAc                   >  1:515419/1‑140 (MQ=255)

                                                                                                                  tGCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTCGATGGCGTGACa                  >  2:1087800/1‑140 (MQ=255)

                                                                                                                   gCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTCGATGGCGTGACAg                 <  2:1173467/140‑1 (MQ=255)

                                                                                                                   gCGATTATTTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTCGATGGCGTGACAg                 <  1:58332/140‑1 (MQ=255)

                                                                                                                        tattTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTCGATGGCGTGACAGaacaa            <  1:170996/140‑1 (MQ=255)

                                                                                                                        tattTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTCGATGGCGTGACAGaacaa            <  2:1233458/140‑1 (MQ=255)

                                                                                                                        tattTGCTCAATTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTCGATGGCGTGACAGaacaa            <  2:479352/140‑1 (MQ=255)

                                                                                                                        tattTGCTCAATTAGGCTGGTATTTACGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTCGATGGCGTGACAGaacaa            <  1:341388/140‑1 (MQ=255)

                                                                                                                                 aaTTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCGTATGCCGTCTTC‑TGCTTGAAAAAAAAAAGATGCTGCAACTGGTTCCGCCAAAAGGGGTTGGGATTGTTGTCGATGGCGTGACAGAACAACACTTtact   >  1:776200/1‑140 (MQ=255)

                                                                                                                                 aaTTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTCGATGGCGTGACAGaa               <  1:5277/128‑1 (MQ=255)

                                                                                                                                 aaTTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTCGATGGCGTGACAGaa               >  2:5277/1‑128 (MQ=255)

                                                                                                                                  aTTAGGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTCGATGGCGTGACAGAACAACACTTtacta  <  2:911305/140‑1 (MQ=255)

AACAGCGTGCCGGGGCTGTCGGACGTCACTTCCAGCTTCGCGATGGAACAGATTAAATACACCACTTCTTTACCCATCGAATAAATATCCAGAATCAGGTCAGGACACAACGCGTGCGATTATTTGCTCAATTAAGCTGGTATTTCCGTCGGGAATGGCGTCGCTATCTCG‑GGGCTGTCGCCTTGCTTGTCATTATCGCGATGCTGCAACTGGTTCCGCCAAAAGTGGTTGGTATTGTTGTCGATGGCGTGACAGAACAACACTTTACTA  >  NC_000913/468758‑469027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A