Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 126 72.5 2472046 99.4% 2457213 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,134,936 A→G T70A (ACG→GCG)  flgG → flagellar basal‑body rod protein FlgG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,134,9360AG96.7% 207.2 / ‑2.9 61T70A (ACG→GCG) flgGflagellar basal‑body rod protein FlgG
Reads supporting (aligned to +/- strand):  ref base A (1/1);  new base G (28/31);  total (29/32)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01

ACAACCTGGCAAACGTCAGTACTAACGGTTTTAAGCGTCAGCGCGCGGTGTTTGAAGATCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCACGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAGGTGATGTTGCCAGATGGTTCAT  >  NC_000913/1134799‑1135062
                                                                                                                                         |                                                                                                                              
acaacCTGGCAAACGTCAGTACTAACGGTTTTAAGCGTCAGCGCGCGGTGTTTGAAGATCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGcgcg                                                                                                                              >  1:203446/1‑140 (MQ=255)
 caacCTGGCAAACGTCAGTACTAACGGTTTTAAGCGTCAGCGCGCGGTGTTTGAAGATCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCgg                                                                                                                             >  2:118312/1‑140 (MQ=255)
                      tAACGGTTTTAAGCGTCAGCGCGCGGTGTTTGAAGATCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTg                                                                                                        <  1:1073604/140‑1 (MQ=255)
                             tttAAGCGTCAGCGCGCGGTGTTTGAAGATCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCtt                                                                                                 >  2:976326/1‑140 (MQ=255)
                             tttAAGCGTCAGCGCGCGGTGTTTGAAGATCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCtt                                                                                                 >  2:896466/1‑140 (MQ=255)
                             tttAAGCGTCAGCGCGCGGTGTTTGAAGATCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCtt                                                                                                 >  2:799385/1‑140 (MQ=255)
                             tttAAGCGTCAGCGCGCGGTGTTTGAAGATCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCtt                                                                                                 >  2:422894/1‑140 (MQ=255)
                               tAAGCGTCAGCGCGCGGCGTTTGAAGATCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTac                                                                                               >  2:921961/1‑140 (MQ=255)
                                aaGCGTCAGCGCGCGGTGTTTGAAGATCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTaca                                                                                              <  2:1215170/140‑1 (MQ=255)
                                aaGCGTCAGCGCGCGGTGTTTGAAGATCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTaca                                                                                              <  1:118312/140‑1 (MQ=255)
                                aaGCGTCAGCGCGCGGTGTTTGAAGATCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTaca                                                                                              <  1:752775/140‑1 (MQ=255)
                                   cGTCAGCGCGCGGTGTTTGAAGATCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCTGTCGCCACTGAACGCTTACACAg                                                                                           <  2:975553/140‑1 (MQ=255)
                                      cAGCGCGCGGTGTTTGAAGATCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAg                                                                                           <  1:16221/137‑1 (MQ=255)
                                      cAGCGCGCGGTGTTTGAAGATCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAg                                                                                           >  2:16221/1‑137 (MQ=255)
                                           cgcgGTGTTTGAAGATCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGaa                                                                                   >  1:494018/1‑140 (MQ=255)
                                              ggTGTTTGAAGATCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAAcc                                                                                <  1:921961/140‑1 (MQ=255)
                                                tgtTTGAAGATCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTg                                                                              >  1:636763/1‑140 (MQ=255)
                                                    tGAAGATCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGc                                                                          <  1:592770/140‑1 (MQ=255)
                                                       aGATCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGa                                                                       <  2:617206/140‑1 (MQ=255)
                                                          tCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAAcc                                                                                >  2:280945/1‑128 (MQ=255)
                                                          tCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAAcc                                                                                <  1:280945/128‑1 (MQ=255)
                                                          tCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGc                                                                          >  2:221831/1‑134 (MQ=255)
                                                          tCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGc                                                                          <  1:221831/134‑1 (MQ=255)
                                                          tCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACca                                                                    >  2:497965/1‑140 (MQ=255)
                                                          tCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACca                                                                    >  2:892558/1‑140 (MQ=255)
                                                          tCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACca                                                                    >  1:1219201/1‑140 (MQ=255)
                                                          tCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCACGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACca                                                                    >  1:476739/1‑140 (MQ=255)
                                                            tGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACcaac                                                                  >  1:32380/1‑140 (MQ=255)
                                                            tGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACcaac                                                                  <  2:32380/140‑1 (MQ=255)
                                                            tGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACcaac                                                                  <  1:892558/140‑1 (MQ=255)
                                                            tGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACcaac                                                                  >  2:225883/1‑140 (MQ=255)
                                                             gCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACcaaca                                                                 <  2:636763/140‑1 (MQ=255)
                                                              cTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACcaacaa                                                                >  2:797878/1‑140 (MQ=255)
                                                              cTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACcaacaa                                                                <  1:799385/140‑1 (MQ=255)
                                                                   tCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCa                                                           >  2:1203529/1‑140 (MQ=255)
                                                                        ccATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGAt                                                      >  1:1218287/1‑140 (MQ=255)
                                                                          aTTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCACGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGt                                                    <  2:476739/140‑1 (MQ=255)
                                                                           ttCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTc                                                   >  1:1140545/1‑140 (MQ=255)
                                                                           ttCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTc                                                   >  1:655300/1‑140 (MQ=255)
                                                                             cGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTcgc                                                 <  2:297828/140‑1 (MQ=255)
                                                                                   ccGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTaa                                           >  1:1149625/1‑140 (MQ=255)
                                                                                             aGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCGACAACAGCAAAGATGTCGCGATTAAagggcagggc                                 >  2:529481/1‑140 (MQ=255)
                                                                                                      aaCAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAg                        >  1:639054/1‑140 (MQ=255)
                                                                                                       aCAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAgg                       >  2:308975/1‑140 (MQ=255)
                                                                                                        cAAACCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAGGt                      <  1:968175/140‑1 (MQ=255)
                                                                                                         aaaCCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAGGTg                     >  1:1023677/1‑140 (MQ=255)
                                                                                                         aaaCCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAGGTg                     <  2:655300/140‑1 (MQ=255)
                                                                                                         aaaCCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAGGTg                     <  1:976326/140‑1 (MQ=255)
                                                                                                          aaCCACCTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAGGTGa                    <  2:1023677/140‑1 (MQ=255)
                                                                                                               ccTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAGGTGATGTTg               <  1:896466/140‑1 (MQ=255)
                                                                                                               ccTTACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAGGTGATGTTg               <  2:1218287/140‑1 (MQ=255)
                                                                                                                  tACCCTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAGGTGATGTTGCCa            <  2:1219201/140‑1 (MQ=255)
                                                                                                                    cccTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAGGTGATGTTGCCAGa          <  1:802417/140‑1 (MQ=255)
                                                                                                                     ccTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAGGTGATGTTGCCAGAt         >  2:143668/1‑140 (MQ=255)
                                                                                                                     ccTCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAGGTGATGTTGCCAGAt         <  1:1203529/140‑1 (MQ=255)
                                                                                                                       tCCGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAGGTGATGTTGCCAGATgg       >  2:1228362/1‑140 (MQ=255)
                                                                                                                         cGGATTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAGGTGATGTTGCCAGATGGtt     >  1:190936/1‑140 (MQ=255)
                                                                                                                            aTTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAGGTGATGTTGCCAGATGGTtcat  <  1:797878/140‑1 (MQ=255)
                                                                                                                            aTTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAGGTGATGTTGCCAGATGGTtcat  <  2:36777/140‑1 (MQ=255)
                                                                                                                            aTTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAGGTGATGTTGCCAGATGGTtcat  <  1:854414/140‑1 (MQ=255)
                                                                                                                            aTTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAGGTGATGTTGCCAGATGGTtcat  <  1:497965/140‑1 (MQ=255)
                                                                                                                            aTTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAGGTGATGTTGCCAGATGGTtcat  <  1:308975/140‑1 (MQ=255)
                                                                                                                            aTTACAAATCGGCGCGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAGGTGATGTTGCCAGATGGTtcat  <  1:225883/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                              
ACAACCTGGCAAACGTCAGTACTAACGGTTTTAAGCGTCAGCGCGCGGTGTTTGAAGATCTGCTTTATCAAACCATTCGCCAGCCGGGGGCACAGTCTTCCGAACAAACCACCTTACCCTCCGGATTACAAATCGGCACGGGGGTACGCCCGGTCGCCACTGAACGCTTACACAGCCAGGGAAACCTGTCGCAGACCAACAACAGCAAAGATGTCGCGATTAAAGGGCAGGGCTTTTTCCAGGTGATGTTGCCAGATGGTTCAT  >  NC_000913/1134799‑1135062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A