Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F28 I1 R1	126	72.5	2472046	99.4%	2457213	138.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,242,080	T→C	intergenic (‑9/+86)	cvrA ← / ← ldcA	putative K(+):H(+) antiporter/murein L,D‑carboxypeptidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,242,080	0	T	C	100.0%	222.5 / NA	60	intergenic (‑9/+86)	cvrA/ldcA	putative K(+):H(+) antiporter/murein L,D‑carboxypeptidase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (25/35); total (25/35)

CATGCCGATCGCCAGAAAAATAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCG  >  NC_000913/1241943‑1242216

cATGCCGATCGCCAGAAAAATAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCAc                                                                                                                                        <  1:732560/140‑1 (MQ=255)

cATGCCGATCGCCAGAAAAATAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCAc                                                                                                                                        <  1:446433/140‑1 (MQ=255)

 aTGCCGATCGCCAGAAAAATAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACt                                                                                                                                       <  2:965517/140‑1 (MQ=255)

 aTGCCGATCGCCAGAAAAATAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACt                                                                                                                                       >  2:337819/1‑140 (MQ=255)

 aTGCCGATCGCCAGAAAAATAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACt                                                                                                                                       <  1:202836/140‑1 (MQ=255)

   gCCGATCGCCAGAAAAATAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTcc                                                                                                                                     >  2:1069241/1‑140 (MQ=255)

      gATCGCCAGAAAAATAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGa                                                                                                                                  >  2:591413/1‑140 (MQ=255)

           ccAGAAAAATAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACg                                                                                                                             <  1:337819/140‑1 (MQ=255)

           ccAGAAAAATAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCACCCAACGGTCGGTCACTCCTGATTACg                                                                                                                             <  2:1061723/140‑1 (MQ=255)

            cAGAAAAATAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGc                                                                                                                            >  2:1230389/1‑140 (MQ=255)

             aGAAAAATAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTATGCt                                                                                                                           <  1:22903/140‑1 (MQ=255)

             aGAAAAATAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCt                                                                                                                           <  1:1069241/140‑1 (MQ=255)

             aGAAAAATAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCt                                                                                                                           <  2:72376/140‑1 (MQ=255)

             aGAAAAATAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCt                                                                                                                           <  1:972410/140‑1 (MQ=255)

             aGAAAAATAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCt                                                                                                                           <  1:554335/140‑1 (MQ=255)

             aGAAAAATAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCt                                                                                                                           <  1:1230389/140‑1 (MQ=255)

             aGAAAAATAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCt                                                                                                                           <  1:1200614/140‑1 (MQ=255)

             aGAAAAATAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCt                                                                                                                           <  1:311326/140‑1 (MQ=255)

             aGAAAAATAACCAGAATAGGAATACCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCt                                                                                                                           <  1:1088912/140‑1 (MQ=255)

               aaaaaTAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGt                                                                                                                         <  2:595945/140‑1 (MQ=255)

               aaaaaTAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGt                                                                                                                         <  1:201373/140‑1 (MQ=255)

                aaaaTAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGtc                                                                                                                        <  2:1026270/140‑1 (MQ=255)

                  aaTAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGtctc                                                                                                                      <  2:936797/140‑1 (MQ=255)

                      aCCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTtat                                                                                                                  >  1:676672/1‑140 (MQ=255)

                           aaTAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATaaa                                                                                                             <  1:591413/140‑1 (MQ=255)

                           aaTAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATaaa                                                                                                             <  2:676672/140‑1 (MQ=255)

                                  aTGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATaaa                                                                                                             <  2:1218206/133‑1 (MQ=255)

                                  aTGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATaaa                                                                                                             >  1:1218206/1‑133 (MQ=255)

                                     ccAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATaaa                                                                                                             <  2:1155277/130‑1 (MQ=255)

                                     ccAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATaaa                                                                                                             >  1:1155277/1‑130 (MQ=255)

                                     ccAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAAcc                                                                                                           <  1:684240/132‑1 (MQ=255)

                                     ccAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAAcc                                                                                                           >  2:684240/1‑132 (MQ=255)

                                     ccAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCata                                                                                                   >  1:954878/1‑140 (MQ=255)

                                                         aCTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGtt                                                                               <  1:671777/140‑1 (MQ=255)

                                                              gTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACt                                                                          <  1:31555/140‑1 (MQ=255)

                                                                       tgctgGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACt                                                                          <  2:795857/131‑1 (MQ=255)

                                                                       tgctgGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACt                                                                          >  1:795857/1‑131 (MQ=255)

                                                                         ctgGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAg                                                               >  1:325618/1‑140 (MQ=255)

                                                                         ctgGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAg                                                               >  2:2083/1‑140 (MQ=255)

                                                                         ctgGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAg                                                               >  2:1106686/1‑140 (MQ=255)

                                                                         ctgGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAg                                                               >  2:855554/1‑140 (MQ=255)

                                                                          tgGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGc                                                              >  2:75020/1‑140 (MQ=255)

                                                                             tGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTg                                                           >  2:953890/1‑140 (MQ=255)

                                                                              gACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGa                                                          >  1:14767/1‑140 (MQ=255)

                                                                                 aaGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGAttt                                                       >  1:749122/1‑140 (MQ=255)

                                                                                         atCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACAt                                               >  1:1005471/1‑140 (MQ=255)

                                                                                              aaGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTaa                                          >  2:357963/1‑140 (MQ=255)

                                                                                               aGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAg                                         <  2:749122/140‑1 (MQ=255)

                                                                                                  tGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAAc                                      <  1:953890/140‑1 (MQ=255)

                                                                                                     aaaGGCTAATTATTGTTGTGGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAgg                                   >  1:385547/1‑140 (MQ=255)

                                                                                                                       tgGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACGGGATg                                <  2:321314/125‑1 (MQ=255)

                                                                                                                       tgGCATCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACGGGATg                                >  1:321314/1‑125 (MQ=255)

                                                                                                                            tCCAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAg            >  1:1123554/1‑140 (MQ=255)

                                                                                                                             ccAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGt           <  1:855554/140‑1 (MQ=255)

                                                                                                                             ccAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGt           <  1:357963/140‑1 (MQ=255)

                                                                                                                              cAACGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTg          >  1:444956/1‑140 (MQ=255)

                                                                                                                                aCGGTCGGTCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGcc        <  2:385547/140‑1 (MQ=255)

                                                                                                                                    tcggtCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTcc    <  2:325618/140‑1 (MQ=255)

                                                                                                                                      ggtCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGt           <  2:535340/131‑1 (MQ=255)

                                                                                                                                      ggtCACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCg  >  1:360874/1‑140 (MQ=255)

CATGCCGATCGCCAGAAAAATAACCAGAATAGGAATGCCAAGACGGGAAGAAAATGAACTAAGTAATATACTGCTGGTGACAAGGATGGATCCTAAGATGAAAAGGCTAATTATTGTTGTGGCATCCAACGGTCGGTTACTCCTGATTACGCTGTCTCTTATATAAACCCTACCATATTAGCGGCAGAGACAGCGTTTTACTTAGCCCTGAAGCGTGATTTTTTTACATTTTAAGAACAGGATGACCGCTAATCGTCAACTGAGTGCCTTCCCG  >  NC_000913/1241943‑1242216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A