Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F28 I1 R1	126	72.5	2472046	99.4%	2457213	138.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,656,816	G→A	R90C (CGC→TGC)	fdx ←	reduced ferredoxin

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,656,816	0	G	A	100.0%	192.1 / NA	54	R90C (CGC→TGC)	fdx	reduced ferredoxin
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (31/23); total (31/23)

CGCATCGTACAGTGCTTCGCCAATTTCGCGGCTATCGGTCCACTTAAGTCCCATACTAACCTCTGTTAATGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCGCGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTCACGAACGATGCAGTGGCAGGTGGTGCAAGCACAG  >  NC_000913/2656683‑2656949

cGCATCGTACAGTGCTTCGCCAATTTCGCGGCTATCGGTCCACTTAAGTCCCATACTAACCTCTGTTAATGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTg                                                                                                                                 >  2:502656/1‑140 (MQ=255)

             gCTTCGCCAATTTCGCGGCTATCGGTCCACTTAAGTCCCATACTAACCTCTGTTAATGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACgg                                                                                                                    >  2:181640/1‑140 (MQ=255)

               ttCGCCAATTTCGCGGCTATCGGTCCACTTAAGTCCCATACTAACCTCTGTTAATGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCt                                                                                                                  >  2:1198772/1‑140 (MQ=255)

                   ccAATTTCGCGGCTATCGGTCCACTTAAGTCCCATACTAACCTCTGTTAATGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTcc                                                                                                              <  1:1198772/140‑1 (MQ=255)

                      aTTTCGCGGCTATCGGTCCACTTAAGTCCCATACTAACCTCTGTTAATGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGc                                                                                                           >  2:717962/1‑140 (MQ=255)

                         tCGCGGCTATCGGTCCACTTAAGTCCCATACTAACCTCTGTTAATGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTcc                                                                                                        <  2:382985/140‑1 (MQ=255)

                         tCGCGGCTATCGGTCCACTTAAGTCCCATACTAACCTCTGTTAATGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTcc                                                                                                        <  1:502656/140‑1 (MQ=255)

                          cgcgGCTATCGGTCCACTTAAGTCCCATACTAACCTCTGTTAATGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCa                                                                                                       <  1:364035/140‑1 (MQ=255)

                                                    aTACTAACCTCTGTTAATGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATgtcg                                                                             >  1:56626/1‑140 (MQ=255)

                                                    aTACTAACCTCTGTTAATGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATgtcg                                                                             <  1:181640/140‑1 (MQ=255)

                                                          aCCTCTGTTAATGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTcc                                                                       >  1:1226631/1‑140 (MQ=255)

                                                              ctGTTAATGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGct                                                                   >  1:175901/1‑140 (MQ=255)

                                                               tGTTAATGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGctc                                                                  >  1:345781/1‑140 (MQ=255)

                                                               tGTTAATGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGctc                                                                  >  1:417410/1‑140 (MQ=255)

                                                                gTTAATGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCGGGCTTTGTCCAGCATGTCGTCTTCCTGctct                                                                 >  2:164589/1‑140 (MQ=255)

                                                                gTTAATGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGctct                                                                 >  2:1143667/1‑140 (MQ=255)

                                                                 ttAATGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATgtcg                                                                             <  1:473615/127‑1 (MQ=255)

                                                                 ttAATGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATgtcg                                                                             >  2:473615/1‑127 (MQ=255)

                                                                 ttAATGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTg                                                                >  1:443365/1‑140 (MQ=255)

                                                                   aaTGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCGGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAg                                                              <  1:164589/140‑1 (MQ=255)

                                                                    aTGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGc                                                             >  1:897104/1‑140 (MQ=255)

                                                                     tGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCt                                                            <  1:717962/140‑1 (MQ=255)

                                                                         cACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTcc                                                        <  2:897104/140‑1 (MQ=255)

                                                                             cgcATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCa                                                    <  1:283715/140‑1 (MQ=255)

                                                                               cATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAATGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGt                                                  >  2:236108/1‑140 (MQ=255)

                                                                               cATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGt                                                  <  1:892128/140‑1 (MQ=255)

                                                                                  ggTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAg                                               >  2:4157/1‑140 (MQ=255)

                                                                                      gATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCaa                                           >  1:287651/1‑140 (MQ=255)

                                                                                            gtAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCtt                                     >  2:774927/1‑140 (MQ=255)

                                                                                             tAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAg                                                   >  1:1206738/1‑125 (MQ=255)

                                                                                             tAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAg                                                   <  2:1206738/125‑1 (MQ=255)

                                                                                             tAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTc                                    >  1:43586/1‑140 (MQ=255)

                                                                                             tAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTc                                    <  1:1143667/140‑1 (MQ=255)

                                                                                             tAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTc                                    >  1:1175494/1‑140 (MQ=255)

                                                                                             tAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTc                                    >  2:734508/1‑140 (MQ=255)

                                                                                              aaCGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCaaaa                                         <  2:1046413/134‑1 (MQ=255)

                                                                                              aaCGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCaaaa                                         >  1:1046413/1‑134 (MQ=255)

                                                                                              aaCGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTCa                                   >  1:178694/1‑140 (MQ=255)

                                                                                              aaCGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTCa                                   >  2:643024/1‑140 (MQ=255)

                                                                                                 gcgGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTCacga                                >  2:1120146/1‑140 (MQ=255)

                                                                                                  cgGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTCacgaa                               <  2:443365/140‑1 (MQ=255)

                                                                                                  cgGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTCacgaa                               <  1:774927/140‑1 (MQ=255)

                                                                                                  cgGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTCacgaa                               <  2:708438/140‑1 (MQ=255)

                                                                                                  cgGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTCacgaa                               >  2:247200/1‑140 (MQ=255)

                                                                                                  cgGGATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTCacgaa                               <  1:4157/140‑1 (MQ=255)

                                                                                                     gATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTCacgaacga                            >  2:258461/1‑140 (MQ=255)

                                                                                                     gATTTCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTCacgaacga                            <  2:1226631/140‑1 (MQ=255)

                                                                                                       tttCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAATGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTCACGAACGATg                          <  1:236108/140‑1 (MQ=255)

                                                                                                       tttCGACTACTAAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTCACGAACGATg                          <  1:247200/140‑1 (MQ=255)

                                                                                                               actaAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTCACGAACGATGCAGTGGCa                  >  2:380753/1‑140 (MQ=255)

                                                                                                               actaAATCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTCACGAACGATGCAGTGGCa                  >  1:137946/1‑140 (MQ=255)

                                                                                                                  aaaTCTTCGTCGGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTCACGAACGATGCAGTGGCAggt               <  1:1120146/140‑1 (MQ=255)

                                                                                                                            cgGTAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTCACGAACGATGCAGTGGCAGGTGGTGCAAGca     <  2:287651/140‑1 (MQ=255)

                                                                                                                               tAACGCACGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTCACGAACGATGCAGTGGCAGGTGGTGCAAGCACAg  >  1:521470/1‑140 (MQ=255)

CGCATCGTACAGTGCTTCGCCAATTTCGCGGCTATCGGTCCACTTAAGTCCCATACTAACCTCTGTTAATGCTCACGCGCATGGTTGATAGTGTAACGCGGGATTTCGACTACTAAATCTTCGTCGGTAACGCGCGCCTGGCAGCTTAAACGGCTTTCCGGCTCCAGTCCCCAGGCTTTGTCCAGCATGTCGTCTTCCTGCTCTGAGCTTTCCGGCAGTGAGTCAAAACCTTCACGAACGATGCAGTGGCAGGTGGTGCAAGCACAG  >  NC_000913/2656683‑2656949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A