Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 126 72.5 2472046 99.4% 2457213 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,848,370 T→C H291R (CAC→CGC)  hycC ← formate hydrogenlyase subunit HycC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,848,3700TC100.0% 326.7 / NA 90H291R (CAC→CGC) hycCformate hydrogenlyase subunit HycC
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (44/46);  total (44/46)

TGAACAGGCTATGGTTAAGCAGATGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGTGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATCCCCCACCACAGCGGTGCATTACCGCCCAGCAGTGACAGGGTTA  >  NC_000913/2848236‑2848505
                                                                                                                                      |                                                                                                                                       
tGAACAGGCTATGGTTAAGCAGATGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTaa                                                                                                                                    >  1:1049216/1‑140 (MQ=255)
tGAACAGGCTATGGTTAAGCAGATGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTaa                                                                                                                                    >  2:865120/1‑140 (MQ=255)
 gAACAGGCTATGGTTAAGCAGATGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAg                                                                                                                                   <  2:1184936/140‑1 (MQ=255)
       gCTATGGTTAAGCAGATGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCcagca                                                                                                                             <  1:520550/140‑1 (MQ=255)
       gCTATGGTTAAGCAGATGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCcagca                                                                                                                             >  2:424562/1‑140 (MQ=255)
         tATGGTTAAGCAGATGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCTAGGGTGCGGTAAGCCAGCAgg                                                                                                                           <  2:1178549/140‑1 (MQ=255)
         tATGGTTAAGCAGATGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAgg                                                                                                                           >  2:1164947/1‑140 (MQ=255)
             gTTAAGCAGATGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCt                                                                                                                       >  2:147867/1‑140 (MQ=255)
                 aGCAGATGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGAt                                                                                                                   >  2:926768/1‑140 (MQ=255)
                 aGCAGATGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGAt                                                                                                                   >  2:936235/1‑140 (MQ=255)
                 aGCAGATGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGAt                                                                                                                   >  1:1083110/1‑140 (MQ=255)
                 aGCAGATGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGAt                                                                                                                   >  2:124760/1‑140 (MQ=255)
                 aGCAGATGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGAt                                                                                                                   >  2:974081/1‑140 (MQ=255)
                 aGCAGATGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGAt                                                                                                                   >  1:649416/1‑140 (MQ=255)
                  gCAGATGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGAtg                                                                                                                  <  1:936235/140‑1 (MQ=255)
                     gATGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGAtgttg                                                                                                               <  1:926768/140‑1 (MQ=255)
                     gATGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGAtgttg                                                                                                               >  2:99428/1‑140 (MQ=255)
                     gATGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGAtgttg                                                                                                               <  1:1164947/140‑1 (MQ=255)
                      aTGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCt                                                                                                                       <  2:1210535/131‑1 (MQ=255)
                      aTGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGAtgttgt                                                                                                              >  1:476077/1‑140 (MQ=255)
                      aTGGTACAGACCACCGACCAGGCCAAGAGCAATAAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCt                                                                                                                       >  1:1210535/1‑131 (MQ=255)
                       tGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTtgtg                                                                                                             <  1:99428/140‑1 (MQ=255)
                          tACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTc                                                                                                          >  1:381494/1‑140 (MQ=255)
                          tACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTc                                                                                                          >  2:330681/1‑140 (MQ=255)
                            cAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTcca                                                                                                        <  2:476077/140‑1 (MQ=255)
                              gACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTccacc                                                                                                      <  2:381494/140‑1 (MQ=255)
                                ccaccGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAg                                                                                                    >  2:593894/1‑140 (MQ=255)
                                ccaccGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAg                                                                                                    <  1:103290/140‑1 (MQ=255)
                                 caccGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTcca                                                                                                        <  2:464880/135‑1 (MQ=255)
                                 caccGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTcca                                                                                                        >  1:464880/1‑135 (MQ=255)
                                 caccGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAgc                                                                                                   <  1:147867/140‑1 (MQ=255)
                                 caccGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAgc                                                                                                   <  1:124760/140‑1 (MQ=255)
                                   ccGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAgcgc                                                                                                 >  2:478536/1‑140 (MQ=255)
                                   ccGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAgcgc                                                                                                 >  1:973758/1‑140 (MQ=255)
                                   ccGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAgcgc                                                                                                 >  1:46276/1‑140 (MQ=255)
                                    cGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGAtgt                                                                                                                 >  1:716227/1‑123 (MQ=255)
                                    cGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGAtgt                                                                                                                 <  2:716227/123‑1 (MQ=255)
                                    cGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTcca                                                                                                        >  2:1152775/1‑132 (MQ=255)
                                    cGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTcca                                                                                                        <  1:1152775/132‑1 (MQ=255)
                                    cGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCa                                                                                                >  1:485062/1‑140 (MQ=255)
                                    cGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCa                                                                                                >  2:431104/1‑140 (MQ=255)
                                    cGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCa                                                                                                >  2:446240/1‑140 (MQ=255)
                                    cGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCa                                                                                                >  1:131951/1‑140 (MQ=255)
                                    cGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCa                                                                                                >  2:179327/1‑140 (MQ=255)
                                      aCCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATa                                                                                              <  1:1055256/140‑1 (MQ=255)
                                       ccAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATAc                                                                                             <  1:1199706/140‑1 (MQ=255)
                                          ggCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGa                                                                                          <  1:871144/140‑1 (MQ=255)
                                                gagCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATAc                                                                                             <  2:762400/131‑1 (MQ=255)
                                                gagCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATAc                                                                                             >  1:762400/1‑131 (MQ=255)
                                                 agCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGa                                                                                   <  2:69688/140‑1 (MQ=255)
                                                  gCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGAc                                                                                  <  2:485062/140‑1 (MQ=255)
                                                   cAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACa                                                                                 <  1:865120/140‑1 (MQ=255)
                                                   cAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACa                                                                                 <  2:46276/140‑1 (MQ=255)
                                                   cAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACa                                                                                 <  2:156088/140‑1 (MQ=255)
                                                    aaTCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACaa                                                                                <  2:1049216/140‑1 (MQ=255)
                                                     aTCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACaaa                                                                               >  2:562482/1‑140 (MQ=255)
                                                     aTCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACaaa                                                                               >  1:12298/1‑140 (MQ=255)
                                                       cAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAAcg                                                                             <  2:1083110/140‑1 (MQ=255)
                                                        aGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAAcgc                                                                            <  1:974081/140‑1 (MQ=255)
                                                          cgcCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCgg                                                                          <  1:701957/140‑1 (MQ=255)
                                                           gcCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGt                                                                         >  2:29198/1‑140 (MQ=255)
                                                                   ttCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGc                                                                 <  2:637736/140‑1 (MQ=255)
                                                                    tCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGcc                                                                >  2:934181/1‑140 (MQ=255)
                                                                      gAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGa                                                              <  2:973758/140‑1 (MQ=255)
                                                                          gcgATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCAc                                                          <  2:661132/140‑1 (MQ=255)
                                                                                  cGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAgcg                                                  <  2:968927/140‑1 (MQ=255)
                                                                                   gTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAgcgc                                                 <  1:562482/140‑1 (MQ=255)
                                                                                   gTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAgcgc                                                 <  1:179327/140‑1 (MQ=255)
                                                                                       cGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATc                                             >  1:941771/1‑140 (MQ=255)
                                                                                        gCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATcc                                            >  1:177530/1‑140 (MQ=255)
                                                                                        gCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATcc                                            >  1:896865/1‑140 (MQ=255)
                                                                                          cAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATcccc                                          <  1:478536/140‑1 (MQ=255)
                                                                                              gcCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATCCCccacc                                      >  2:856423/1‑140 (MQ=255)
                                                                                               cccagccccagcAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATCCCccacca                                     <  2:131951/140‑1 (MQ=255)
                                                                                                ccagccccagcAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATCCCCcaccac                                    <  1:446240/140‑1 (MQ=255)
                                                                                                    ccccagcAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCAGCAGCAGCGCGa                                               >  1:864371/1‑125 (MQ=255)
                                                                                                    ccccagcAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGa                                               <  2:864371/125‑1 (MQ=255)
                                                                                                     cccagcAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATCCCCCACCACAGCgg                               <  2:976554/140‑1 (MQ=255)
                                                                                                     cccagcAGGATGATGCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATCCCCCACCACAGCgg                               <  1:593894/140‑1 (MQ=255)
                                                                                                              atgatgCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATCCCCCACCACAGCGGTGCATTAcc                      >  2:358033/1‑140 (MQ=255)
                                                                                                              atgatgCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATCCCCCACCACAGCGGTGCATTAcc                      >  2:983379/1‑140 (MQ=255)
                                                                                                               tgatgCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATCCCCCACCACAGCGGTGCATTACCg                     >  1:250822/1‑140 (MQ=255)
                                                                                                                  tgCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATCCCCCACCACAGCGGTGCATTACCGccc                  <  1:358033/140‑1 (MQ=255)
                                                                                                                   gCCGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATCCCCCACCACAGCGGTGCATTACCGCCca                 >  1:292599/1‑140 (MQ=255)
                                                                                                                     cGATATTTTCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATCCCCCACCACAGCGGTGCATTACCGCCcagc               >  1:576256/1‑140 (MQ=255)
                                                                                                                          ttttCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATCCCCCACCACAGCGGTGCATTACCGCCCAGCAGTGa          <  1:29198/140‑1 (MQ=255)
                                                                                                                          ttttCCAGGGTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATCCCCCACCACAGCGGTGCATTACCGCCCAGCAGTGa          <  2:576256/140‑1 (MQ=255)
                                                                                                                                  ggTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATCCCCCACCACAGCGGTGCATTACCGCCCAGCAGTGAc         <  1:156341/133‑1 (MQ=255)
                                                                                                                                  ggTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATCCCCCACCACAGCGGTGCATTACCGCCCAGCAGTGAc         >  2:156341/1‑133 (MQ=255)
                                                                                                                                  ggTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATCCCCCACCACAGCGGTGCATTACCGCCCAGCAGTGACAGGGTTa  <  1:934181/140‑1 (MQ=255)
                                                                                                                                  ggTGCGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATCCCCCACCACAGCGGTGCATTACCGCCCAGCAGTGACAGGGTTa  >  1:1148876/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                       
TGAACAGGCTATGGTTAAGCAGATGGTACAGACCACCGACCAGGCCAAGAGCAATCAGCGCCGGTTGTTCGAGCGCGATACCCGTTACGCCAGCGCCCAGCCCCAGCAGGATGATGCCGATATTTTCCAGGGTGTGGTAAGCCAGCAGGCGCTGGATGTTGTGCTCCACCAGCGCATACAGACCACCGACAAACGCGGTGATCATGCCGAGCACCAGCAGCGCGATCCCCCACCACAGCGGTGCATTACCGCCCAGCAGTGACAGGGTTA  >  NC_000913/2848236‑2848505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A