Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F28 I1 R1
|
126 |
72.5 |
2472046 |
99.4% |
2457213 |
138.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,151,963 |
T→C |
T8A (ACG→GCG) |
exbB ← |
Ton complex subunit ExbB |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,151,963 | 0 | T | C | 100.0%
| 241.8
/ NA
| 65 | T8A (ACG→GCG) | exbB | Ton complex subunit ExbB |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (28/37); total (28/37) |
CTGATTGAAGAACTCTACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGTCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCATACTGCCGTACCT > NC_000913/3151832‑3152086
|
cTGATTGAAGAACTCTACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTa < 1:475329/140‑1 (MQ=255)
agaaCTCTACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAAttatta > 2:772305/1‑140 (MQ=255)
agaaCTCTACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAAttatta > 1:658146/1‑140 (MQ=255)
agaaCTCTACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAAttatta > 2:1203057/1‑140 (MQ=255)
aaCTCTACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTAcc < 1:263183/140‑1 (MQ=255)
aCTCTACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTAccc < 2:155952/140‑1 (MQ=255)
ctctACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCa < 1:1020230/140‑1 (MQ=255)
ctctACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCa < 2:488624/140‑1 (MQ=255)
tctACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCAc < 2:1002753/140‑1 (MQ=255)
tctACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCAc < 2:702705/140‑1 (MQ=255)
tACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTa < 2:57356/125‑1 (MQ=255)
tACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTa > 1:57356/1‑125 (MQ=255)
tACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACtg < 2:658146/140‑1 (MQ=255)
cGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACtgtg < 2:1197245/140‑1 (MQ=255)
tACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAattat < 2:640787/123‑1 (MQ=255)
tACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAattat > 1:640787/1‑123 (MQ=255)
tACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACtgtg < 2:57297/134‑1 (MQ=255)
tACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACtgtg > 1:57297/1‑134 (MQ=255)
tACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTAtctc > 2:1180813/1‑140 (MQ=255)
aCTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTcc > 2:301038/1‑140 (MQ=255)
aCTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTcc > 2:261953/1‑140 (MQ=255)
gaagaTTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACg < 1:261953/140‑1 (MQ=255)
gaagaTTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACg < 1:301038/140‑1 (MQ=255)
agaTTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCa > 1:556752/1‑140 (MQ=255)
agaTTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCa > 2:350960/1‑140 (MQ=255)
gaTTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCaa < 2:1141620/140‑1 (MQ=255)
tACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCt > 1:717168/1‑137 (MQ=255)
tACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCt < 2:717168/137‑1 (MQ=255)
tACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTgcg > 2:564440/1‑140 (MQ=255)
aGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCataa > 1:825575/1‑140 (MQ=255)
gCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCataata > 1:456578/1‑140 (MQ=255)
aaaaTAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCataataata > 1:1045885/1‑140 (MQ=255)
aaaaTAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCataataata > 2:1130598/1‑140 (MQ=255)
gCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAac > 2:708864/1‑140 (MQ=255)
cccAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAacg < 2:825575/140‑1 (MQ=255)
atcatcACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGt < 1:564440/140‑1 (MQ=255)
tcatcaCGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTc < 2:549906/140‑1 (MQ=255)
atcaCGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATAAAAACGACGTCGa < 2:1045885/140‑1 (MQ=255)
gCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGa < 2:87554/140‑1 (MQ=255)
cACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGAt > 2:1125050/1‑140 (MQ=255)
aCTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATa < 1:708864/140‑1 (MQ=255)
cTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAg > 2:1353/1‑140 (MQ=255)
tAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTc > 2:975139/1‑140 (MQ=255)
tAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTc > 1:147880/1‑140 (MQ=255)
cGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGtt < 1:772305/140‑1 (MQ=255)
cGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGtt < 1:1125050/140‑1 (MQ=255)
cGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGtt < 2:456578/140‑1 (MQ=255)
aCAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTtct < 1:92816/140‑1 (MQ=255)
tatCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCAtt < 2:1068892/140‑1 (MQ=255)
tCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTAc < 1:975139/140‑1 (MQ=255)
gCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTAt < 2:147880/140‑1 (MQ=255)
gCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTAt < 2:310301/140‑1 (MQ=255)
gCGTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTAt < 1:1203057/140‑1 (MQ=255)
gTGCTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTAttt < 1:1353/140‑1 (MQ=255)
cTGATACATTCCCCAGACCGAAAGGTCCGCCTGCATTAAATTATTTCCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCa < 2:556752/140‑1 (MQ=255)
cTGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCa < 1:1180813/140‑1 (MQ=255)
tGATACATACCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCAt < 1:293481/140‑1 (MQ=255)
acCCCAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCATACTGCCGt > 2:518808/1‑140 (MQ=255)
ccccAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCa > 2:370650/1‑130 (MQ=255)
ccccAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCa < 1:370650/130‑1 (MQ=255)
ccccAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCATACTGCCGTa < 1:518808/140‑1 (MQ=255)
cAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCATACTGCCGTACCt > 1:1233300/1‑140 (MQ=255)
cAGACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCATACTGCCGTACCt > 2:417076/1‑140 (MQ=255)
cAGACGGAAAGGTCCGCCTGCATTAAATTATTACACACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCATACTGCCGTACCt > 2:221433/1‑140 (MQ=255)
gACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCATACTGc < 2:749036/131‑1 (MQ=255)
gACGGAAAGGTCCGCCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCATACTGc > 1:749036/1‑131 (MQ=255)
|
CTGATTGAAGAACTCTACGCTCTTACTGAAGAAGATTGCCCAGGTGACTACGGAGGCCAAAATAAGCCCAATCATCACGCACTTAACGACAATATCGGCGTGCTGATACATACCCCAGACGGAAAGGTCCGTCTGCATTAAATTATTACCCACTGTGTATCTCCAGGACGCAAGTCACAAAATCTGCGCATAATAATATCAAAACGACGTCGAATTGATAGTCGTTCTCATTACTATTTGCATACTGCCGTACCT > NC_000913/3151832‑3152086
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A