Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	108	95.2	3177646	99.2%	3152224	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,398,613	A→G	Y4H (TAT→CAT)	uspE ←	universal stress protein with a role cellular motility

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,398,613	0	A	G	100.0%	253.1 / NA	66	Y4H (TAT→CAT)	uspE	universal stress protein with a role cellular motility
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (28/38); total (28/38)

GTCATTTCGTATGAGAAGTCATAGATCGGCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATACATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGCCAGATCAATAAATCAGAAAAATTTAATGATATGACAGA  >  NC_000913/1398477‑1398749

gtCATTTCGTATGAGAAGTCATAGATCGGCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCAt                                                                                                                                       >  2:1577962/1‑140 (MQ=255)

 tCATTTCGTATGAGAAGTCATAGATCGGCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATa                                                                                                                                      >  2:105067/1‑140 (MQ=255)

 tCATTTCGTATGAGAAGTCATAGATCGGCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATa                                                                                                                                      <  1:21459/140‑1 (MQ=255)

  cATTTCGTATGAGAAGTCATAGATCGGCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAg                                                                                                                                     <  1:1390464/140‑1 (MQ=255)

  cATTTCGTATGAGAAGTCATAGATCGGCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAg                                                                                                                                     <  2:305878/140‑1 (MQ=255)

  cATTTCGTATGAGAAGTCATAGATCGGCAAAAAGGCTTTAATTCTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAg                                                                                                                                     <  2:1390613/140‑1 (MQ=255)

      tCGTATGAGAAGTCATAGATCGGCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCAt                                                                                                                                 >  1:974937/1‑140 (MQ=255)

      tCGTATGAGAAGTCATAGATCGGCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCAt                                                                                                                                 <  2:210440/140‑1 (MQ=255)

            gagaAGTCATAGATCGGCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAggg                                                                                                                           <  2:492812/140‑1 (MQ=255)

             agaAGTCATAGATCGGCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGt                                                                                                                          >  1:525217/1‑140 (MQ=255)

               aaGTCATAGATCGGCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGtct                                                                                                                        >  2:838319/1‑140 (MQ=255)

                 gTCATAGATCGGCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTcc                                                                                                                      >  1:1380397/1‑140 (MQ=255)

                    aTAGATCGGCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTa                                                                                                                   <  2:470355/140‑1 (MQ=255)

                       gATCGGCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTacaa                                                                                                                <  1:1144086/140‑1 (MQ=255)

                         tCGGCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTacaaca                                                                                                              <  2:234831/140‑1 (MQ=255)

                         tCGGCAAAAAGGCTTTAATTTTACCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTacaaca                                                                                                              <  1:36781/140‑1 (MQ=255)

                          cGGCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTAcaacaa                                                                                                             >  1:1054741/1‑140 (MQ=255)

                           ggCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACaacaac                                                                                                            >  1:496339/1‑140 (MQ=255)

                            gCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACt                                                                                                           >  1:960104/1‑140 (MQ=255)

                                  aGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAAc                                                                                                     >  1:1408372/1‑140 (MQ=255)

                                  aGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAAc                                                                                                     <  2:1066790/140‑1 (MQ=255)

                                   ggCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACg                                                                                                    <  2:1195415/140‑1 (MQ=255)

                                   ggCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACg                                                                                                    <  2:1538449/140‑1 (MQ=255)

                                     cTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCa                                                                                                  <  2:1166581/140‑1 (MQ=255)

                                       ttAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGt                                                                                                <  1:1353232/140‑1 (MQ=255)

                                              tGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGTATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAAt                                                                                         >  1:1075941/1‑140 (MQ=255)

                                              tGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAAt                                                                                         >  1:1483506/1‑140 (MQ=255)

                                                      aTCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAt                                                                                 <  1:284280/140‑1 (MQ=255)

                                                      aTCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAt                                                                                 <  1:838319/140‑1 (MQ=255)

                                                      aTCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAt                                                                                 <  1:164796/140‑1 (MQ=255)

                                                      aTCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAt                                                                                 <  1:1166108/140‑1 (MQ=255)

                                                          gTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAAc                                                                             <  2:1483506/140‑1 (MQ=255)

                                                           ttGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAAcc                                                                            <  1:105067/140‑1 (MQ=255)

                                                                 taaataaaCAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATc                                                                      <  2:1192611/140‑1 (MQ=255)

                                                                   aataaaCAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTg                                                                    <  2:974937/140‑1 (MQ=255)

                                                                   aataaaCAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTg                                                                    <  2:890782/140‑1 (MQ=255)

                                                                        aCAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGtgaa                                                               <  2:178468/140‑1 (MQ=255)

                                                                           gCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGtgaatga                                                            >  1:1026009/1‑140 (MQ=255)

                                                                              cgccgcAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAAc                                                         >  1:790991/1‑140 (MQ=255)

                                                                               gccgcAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACa                                                        <  1:1577962/140‑1 (MQ=255)

                                                                                     aTGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGtgatg                                                  <  2:525217/140‑1 (MQ=255)

                                                                                     aTGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTCGTGAATGAAACAGtgatg                                                  <  1:962535/140‑1 (MQ=255)

                                                                                      tGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGtgatga                                                 >  1:826946/1‑140 (MQ=255)

                                                                                               gtcgtcCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGc                                        <  2:1081506/140‑1 (MQ=255)

                                                                                                tcgtcCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGcc                                       >  2:1023164/1‑140 (MQ=255)

                                                                                                tcgtcCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGcc                                       >  1:429726/1‑140 (MQ=255)

                                                                                                tcgtcCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGcc                                       <  2:1057484/140‑1 (MQ=255)

                                                                                                  gtcCTGGTTAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGCCAg                                     >  2:936757/1‑140 (MQ=255)

                                                                                                          tAGGATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGCCAGATCAATaa                             >  2:1527173/1‑140 (MQ=255)

                                                                                                             gATCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGCCAGATCAATAAATc                          >  1:1109319/1‑140 (MQ=255)

                                                                                                              aTCGATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGCCAGATCAATAAATCa                         >  2:481015/1‑140 (MQ=255)

                                                                                                                 gATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGCCAGATCAATAAATCAGaa                      <  2:960104/140‑1 (MQ=255)

                                                                                                                 gATAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGCCAGATCAATAAATCAGaa                      <  2:496339/140‑1 (MQ=255)

                                                                                                                  aTAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGCCAGATCAATAAATCAGaaa                     >  2:1556446/1‑140 (MQ=255)

                                                                                                                  aTAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGCCAGATCAATAAATCAGaaa                     >  1:1089400/1‑140 (MQ=255)

                                                                                                                  aTAACAACGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGCCAGATCAATAAATCAGaaa                     >  1:1298208/1‑140 (MQ=255)

                                                                                                                       aacGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGCCAGATCAATAAATCAGAAAAAttt                >  1:1391733/1‑140 (MQ=255)

                                                                                                                       aacGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGCCAGATCAATAAATCAGAAAAAttt                <  2:1002374/140‑1 (MQ=255)

                                                                                                                         cGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGCCAGATCAATAAATCAGAAAAATTTaa              >  1:335411/1‑140 (MQ=255)

                                                                                                                         cGAGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGCCAGATCAATAAATCAGAAAAATTTaa              <  1:1527173/140‑1 (MQ=255)

                                                                                                                           aGCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGCCAGATCAATAAATCAGAAAAATTTAATg            >  1:1527206/1‑140 (MQ=255)

                                                                                                                            gCATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGCCAGATCAATAAATCAGAAAAATTTAATGa           <  2:778934/140‑1 (MQ=255)

                                                                                                                             cATGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGCCAGATCAATAAATCAGAAAAATTTAATGat          >  1:1383048/1‑140 (MQ=255)

                                                                                                                              aTGTTCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGCCAGATCAATAAATCAGAAAAATTTAATGata         <  2:1298208/140‑1 (MQ=255)

                                                                                                                                 ttCTGATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGCCAGATCAATAAATCAGAAAAATTTAATGATATGa      <  2:790991/140‑1 (MQ=255)

                                                                                                                                     gATGCATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGCCAGATCAATAAATCAGAAAAATTTAATGATATGACAGa  <  2:1380397/140‑1 (MQ=255)

GTCATTTCGTATGAGAAGTCATAGATCGGCAAAAAGGCTTTAATTTTGCCACCAATCCGTTGATGTAAATAAACAGCTCGCCGCAATGCTGGTTGGTCGTCCTGGTTAGGATCGATAACAACGAGCATGTTCTGATACATAGCCATACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGATTAACCCATATCTGGTGAATGAAACAGTGATGAACCTTCTGCCAGATCAATAAATCAGAAAAATTTAATGATATGACAGA  >  NC_000913/1398477‑1398749

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A