Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 162 93.0 3098984 99.0% 3067994 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,400,524 A→G V417A (GTA→GCA)  abgT ← p‑aminobenzoyl glutamate:H(+) symporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,400,5240AG100.0% 289.9 / NA 79V417A (GTA→GCA) abgTp‑aminobenzoyl glutamate:H(+) symporter
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (35/44);  total (35/44)

TTGCAGGAATCCAAGAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTACGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGAACTTTCCAGTATATCGGTCAGCCC  >  NC_000913/1400397‑1400660
                                                                                                                               |                                                                                                                                        
ttGCAGGAATCCAAGAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATggggg                                                                                                                              >  1:1191044/1‑140 (MQ=255)
ttGCAGGAATCCAAGAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATggggg                                                                                                                              >  1:648630/1‑140 (MQ=255)
 tGCAGGAATCCAAGAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGc                                                                                                                             >  1:118912/1‑140 (MQ=255)
   cAGGAATCCAAGAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCga                                                                                                                           >  1:535410/1‑140 (MQ=255)
   cAGGAATCCAAGAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCga                                                                                                                           <  2:1059004/140‑1 (MQ=255)
        aTCCAAGAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATc                                                                                                                      >  2:229863/1‑140 (MQ=255)
           cAAGAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGAc                                                                                                                   <  1:1027979/140‑1 (MQ=255)
           cAAGAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGAc                                                                                                                   <  2:120563/140‑1 (MQ=255)
           cAAGAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGAc                                                                                                                   <  2:786077/140‑1 (MQ=255)
             ataaaCAGTGTATCCAAAGGTTTTACCGGCGCTAAAGCCAATACGGATGAGTCGGCAATTCGAAAGAGGATTTGCGCAAATGACGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCa                                                                                                                 <  2:1360063/138‑1 (MQ=255)
             aGAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCa                                                                                                                 <  2:1307367/140‑1 (MQ=255)
              gAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAg                                                                                                                <  2:537073/140‑1 (MQ=255)
                   aGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAGACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGc                                                                                                           >  1:1398476/1‑140 (MQ=255)
                   aGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGc                                                                                                           >  2:334241/1‑140 (MQ=255)
                   aGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGc                                                                                                           >  2:1339860/1‑140 (MQ=255)
                     tGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCgg                                                                                                         >  1:1045115/1‑140 (MQ=255)
                       gAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGaa                                                                                                       <  1:248148/140‑1 (MQ=255)
                          cAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCg                                                                                                    <  1:1154209/140‑1 (MQ=255)
                          cAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCg                                                                                                    <  2:603764/140‑1 (MQ=255)
                           aaaaGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGc                                                                                                   <  2:286591/140‑1 (MQ=255)
                           aaaaGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGc                                                                                                   <  1:760273/140‑1 (MQ=255)
                            aaaGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCt                                                                                                  <  2:539583/140‑1 (MQ=255)
                                  gaTACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAAt                                                                                            >  2:932930/1‑140 (MQ=255)
                                    tACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATaa                                                                                          <  2:1045115/140‑1 (MQ=255)
                                     aCCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATaaa                                                                                         >  1:659397/1‑140 (MQ=255)
                                      ccGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAAc                                                                                        <  2:680553/140‑1 (MQ=255)
                                      ccGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAAc                                                                                        <  2:1191044/140‑1 (MQ=255)
                                       cGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACa                                                                                       >  2:770410/1‑140 (MQ=255)
                                       cGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACa                                                                                       >  2:705682/1‑140 (MQ=255)
                                        ggCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACAt                                                                                      <  2:1520529/140‑1 (MQ=255)
                                         gcgcTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATg                                                                                     >  2:500961/1‑140 (MQ=255)
                                          cgcTAAAGGCAATACGGATGAGTCGGGAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGc                                                                                    >  1:1487553/1‑140 (MQ=255)
                                          cgcTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGc                                                                                    >  1:1023719/1‑140 (MQ=255)
                                             tAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATa                                                                                 <  1:1370386/140‑1 (MQ=255)
                                                aGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATaaga                                                                              <  1:342621/140‑1 (MQ=255)
                                                      tACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAgg                                                                        >  1:213534/1‑140 (MQ=255)
                                                          gATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAg                                                                    <  1:960488/140‑1 (MQ=255)
                                                           aTGAGTCGGCAATACGAAAGAGGATTTGTGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGc                                                                   >  2:1345704/1‑140 (MQ=255)
                                                           aTGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGAATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGc                                                                   >  2:1200624/1‑140 (MQ=255)
                                                              aGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAAc                                                                >  1:1507288/1‑140 (MQ=255)
                                                                tCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGCAAGAGGAAAGCAACGc                                                              >  1:1381148/1‑140 (MQ=255)
                                                                tCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGc                                                              >  1:934874/1‑140 (MQ=255)
                                                                tCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGc                                                              >  2:667111/1‑140 (MQ=255)
                                                                  ggCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCa                                                            >  1:139871/1‑140 (MQ=255)
                                                                    cAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGa                                                          >  1:107145/1‑140 (MQ=255)
                                                                                 gATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCg                                             >  2:636120/1‑140 (MQ=255)
                                                                                 gATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCg                                             >  1:687734/1‑140 (MQ=255)
                                                                                    ttGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGa                                          <  1:535747/140‑1 (MQ=255)
                                                                                      gcgcAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATg                                        <  1:705682/140‑1 (MQ=255)
                                                                                           aaTGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCt                                   >  1:1497120/1‑140 (MQ=255)
                                                                                           aaTGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCt                                   <  1:1364921/140‑1 (MQ=255)
                                                                                           aaTGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCt                                   <  1:612776/140‑1 (MQ=255)
                                                                                           aaTGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCt                                   <  1:1339860/140‑1 (MQ=255)
                                                                                            aTGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTa                                  >  1:787823/1‑140 (MQ=255)
                                                                                                cGGGTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGcc                              <  1:1136783/140‑1 (MQ=255)
                                                                                                   gTGAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTg                           <  2:1487553/140‑1 (MQ=255)
                                                                                                     gAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCGATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGaa                         <  1:972034/140‑1 (MQ=255)
                                                                                                     gAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGaa                         <  2:659397/140‑1 (MQ=255)
                                                                                                     gAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGaa                         <  2:647847/140‑1 (MQ=255)
                                                                                                     gAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGaa                         <  1:117614/140‑1 (MQ=255)
                                                                                                     gAAAGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGaa                         <  1:1176435/140‑1 (MQ=255)
                                                                                                       aaGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGAACt                       <  1:229863/140‑1 (MQ=255)
                                                                                                       aaGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGAACt                       <  1:1200624/140‑1 (MQ=255)
                                                                                                       aaGCCAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGAACt                       <  2:1146227/140‑1 (MQ=255)
                                                                                                          ccAAGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGAACTTTc                    <  2:118912/140‑1 (MQ=255)
                                                                                                            aaGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGAACTTTCCa                  >  1:1277439/1‑140 (MQ=255)
                                                                                                            aaGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGAACTTTCCa                  <  2:535410/140‑1 (MQ=255)
                                                                                                            aaGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGAACTTTCCa                  <  1:249160/140‑1 (MQ=255)
                                                                                                            aaGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGAACTTTCCa                  <  1:770410/140‑1 (MQ=255)
                                                                                                             aGTAGCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGAACTTTCCAg                 >  1:806464/1‑140 (MQ=255)
                                                                                                                 gCATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGAACTTTCCAGtata             <  2:1307763/140‑1 (MQ=255)
                                                                                                                  cATAAACATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGAACTTTCCAGTatat            <  2:1398476/140‑1 (MQ=255)
                                                                                                                      aaCATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGAACTTTCCAGTATATCGGt        <  2:607713/140‑1 (MQ=255)
                                                                                                                      aaCATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGAACTTTCCAGTATATCGGt        <  2:648630/140‑1 (MQ=255)
                                                                                                                      aaCATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGAACTTTCCAGTATATCGGt        <  1:649784/140‑1 (MQ=255)
                                                                                                                      aaCATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGAACTTTCCAGTATATCGGt        <  1:1443016/140‑1 (MQ=255)
                                                                                                                       aCATTGGTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGAACTTTCCAGTATATCGGTc       >  2:1434745/1‑140 (MQ=255)
                                                                                                                           tGGTGCGAAAATGGGGCCGAGAACCGACCAGATTGCGGAACCCCGGGCAAAAAACAGGCATAGGAAGGAGGAAAGCACCGCCAGACCGACAAACCCCGGGATGCCGCAAACCCCTGAACTTCCCAGTATACCGGCCAGcc   >  2:269425/1‑140 (MQ=255)
                                                                                                                            ggTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGAACTTTCCAGTATATCGGTCAGccc  >  1:268798/1‑140 (MQ=255)
                                                                                                                            ggTGCGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGAACTTTCCAGTATATCGGTCAGccc  >  1:211644/1‑140 (MQ=255)
                                                                                                                               |                                                                                                                                        
TTGCAGGAATCCAAGAAACAGTGGAACAAAAGGAGATACCGGCGCTAAAGGCAATACGGATGAGTCGGCAATACGAAAGAGGATTTGCGCAAATGCCGGGTGAAAGCCAAGTAGCATAAACATTGGTACGAAAATGGGGGCGAGAATCGACCAGATTGCGGAACCGCTGGCAATAAACATGCATAAGAAAGAGGAAAGCAACGCCAGACCGACAAACGCCGGGATGCCGCTAAGCCCTGAACTTTCCAGTATATCGGTCAGCCC  >  NC_000913/1400397‑1400660

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A