Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F28 I1 R1
|
123 |
51.0 |
1731148 |
99.3% |
1719029 |
138.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,401,564 |
A→G |
S70S (AGT→AGC) |
abgT ← |
p‑aminobenzoyl glutamate:H(+) symporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,401,564 | 0 | A | G | 100.0%
| 171.7
/ NA
| 47 | S70S (AGT→AGC) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (23/24); total (23/24) |
CATTAGTGCTGGCAGTAAGCCGACGCGCTCCGCCAGACCGGCACCTAAAACCAGCGCCAGGATCGCACCAAGTGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACACTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGA > NC_000913/1401432‑1401696
|
cATTAGTGCTGGCAGTAAGCCGACGCGCTCCGCCAGACCGGCACCTAAAACCAGCGCCAGGATCGCACCAAGTGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCa < 1:671482/140‑1 (MQ=255)
ttAGTGCTGGCAGTAAGCCGACGCGCTCCGCCAGACCGGCACCTAAAACCAGCGCCAGGATCGCACCAAGTGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAgg > 2:228698/1‑140 (MQ=255)
ggCAGTAAGCCGACGCGCTCCGCCAGACCGGCACCTAAAACCAGCGCCAGGATCGCACCAAGTGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTcac > 2:649641/1‑140 (MQ=255)
ggCAGTAAGCCGACGCGCTCCGCCAGACCGGCACCTAAAACCAGCGCCAGGATCGCACCAAGTGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAA‑CAGTGTAATCCTTCCACGCTGa > 2:548418/1‑126 (MQ=255)
ggCAGTAAGCCGACGCGCTCCGCCAGACCGGCACCTAAAACCAGCGCCAGGATCGCACCAAGTGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAA‑CAGTGTAATCCTTCCACGCTGa < 1:548418/126‑1 (MQ=255)
cAGTAAGCCGACGCGCTCCGCCAGACCGGCACCTAAAACCAGCGCCAGGATCGCACCAAGTGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTcacca > 1:58294/1‑140 (MQ=255)
gTAAGCCGACGCGCTCCGCCAGACCGGCACCTAAAACCAGCGCCAGGATCGCACCAAGTGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACg < 2:69627/140‑1 (MQ=255)
aaGCCGACGCGCTCCGCCAGACCGGCACCTAAAACCAGCGCCAGGATCGCACCAAGTGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGAc < 2:248244/140‑1 (MQ=255)
aGCCGACGCGCTCCGCCAGACCGGCACCTAAAACCAGCGCCAGGATCGCACCAAGTGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTcac > 2:380657/1‑133 (MQ=255)
aGCCGACGCGCTCCGCCAGACCGGCACCTAAAACCAGCGCCAGGATCGCACCAAGTGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTcac < 1:380657/133‑1 (MQ=255)
gCCGACGCGCTCCGCCAGACCGGCACCTAAAACCAGCGCCAGGATCGCACCAAGTGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACg > 2:185204/1‑136 (MQ=255)
gCCGACGCGCTCCGCCAGACCGGCACCTAAAACCAGCGCCAGGATCGCACCAAGTGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACg < 1:185204/136‑1 (MQ=255)
cgcgCTCCGCCAGACCGGCACCTAAAACCAGCGCCAGGATCGCACCAAGTGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTa > 1:104724/1‑140 (MQ=255)
aCCGGCACCTAAAACCAGCGCCAGGATCGCACCAAGTGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGt > 2:610200/1‑140 (MQ=255)
gCACCTAAAACCAGCGCCAGGATCGCACCAAGTGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGttttt > 1:37278/1‑140 (MQ=255)
cgcCAGGATCGCACCAAGTGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCaa > 1:190535/1‑140 (MQ=255)
aTCGCACCAAGTGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGa < 1:257462/140‑1 (MQ=255)
cAAGTGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAAtt < 2:190535/140‑1 (MQ=255)
gTGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGcc > 1:796759/1‑140 (MQ=255)
tGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCcg < 2:796759/140‑1 (MQ=255)
tGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCcg < 2:794817/140‑1 (MQ=255)
gCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCcgtcgt < 2:498328/140‑1 (MQ=255)
gCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCcgtcgt > 2:781155/1‑140 (MQ=255)
aaaCCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCAc < 2:37278/140‑1 (MQ=255)
aaCCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCAcc < 2:794745/140‑1 (MQ=255)
aaCCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCAcc > 2:222396/1‑140 (MQ=255)
aaCCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCAcc < 2:104724/140‑1 (MQ=255)
ccGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCAt > 2:748050/1‑140 (MQ=255)
ccGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCAt > 1:227502/1‑140 (MQ=255)
ttttAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATa < 1:649641/140‑1 (MQ=255)
cATTGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAg > 2:474133/1‑140 (MQ=255)
tGGGTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGTCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATa < 1:610200/140‑1 (MQ=255)
ggTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATaaa > 1:72747/1‑140 (MQ=255)
ggTAAAAACCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATaaa > 1:333897/1‑140 (MQ=255)
aaCCAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAg > 2:855880/1‑140 (MQ=255)
ccAGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGaa < 2:469226/140‑1 (MQ=255)
aGTGTAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGaaaa < 1:222396/140‑1 (MQ=255)
gtgtAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAg < 2:666759/140‑1 (MQ=255)
gtgtAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAg < 2:227502/140‑1 (MQ=255)
tgtAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAgg < 2:47732/140‑1 (MQ=255)
tgtAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAgg > 1:73895/1‑140 (MQ=255)
tAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGaaaa > 2:634866/1‑136 (MQ=255)
tAATCCTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGaaaa < 1:634866/136‑1 (MQ=255)
cTTCCACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGa < 1:748050/140‑1 (MQ=255)
ccACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGaa < 1:276253/126‑1 (MQ=255)
ccACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGaa > 2:276253/1‑126 (MQ=255)
ccACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGaa < 1:103622/126‑1 (MQ=255)
ccACGCTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGaa > 2:103622/1‑126 (MQ=255)
|
CATTAGTGCTGGCAGTAAGCCGACGCGCTCCGCCAGACCGGCACCTAAAACCAGCGCCAGGATCGCACCAAGTGGAGCAAAACCGCTAAAGTTTTTAATAACATTGGGTAAAAACCAGTGTAATCCTTCCACACTGAGCAGGTTTTTCACCACGACCGGCGTACCATCGGTCGGGTTTTTCGCACTGACGCCAAAGGCCGACAAAATTGCCGTCGTCACCATGAGTACGATAATCAAATAGATAAAGAGCAGAAAAGGATGGGGA > NC_000913/1401432‑1401696
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
