Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 108 95.2 3177646 99.2% 3152224 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,717,473 C→A G179C (GGC→TGC)  pdxH ← pyridoxal 5‑phosphate synthase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,717,4730CA98.8% 269.9 / ‑4.4 82G179C (GGC→TGC) pdxHpyridoxal 5‑phosphate synthase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base A (34/47);  minor base G (1/0);  total (35/47)
Fisher's exact test for biased strand distribution p-value = 4.27e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01

GATTTTTGCATCTTTTCAGGGTGCAAGACGATCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCCCCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGAAACCCATGCACCAATCTGGCTATCACGCGGG  >  NC_000913/1717336‑1717609
                                                                                                                                         |                                                                                                                                        
gATTTTTGCATCTTTTCAGGGTGCAAGACGATCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGcacc                                                                                                                                        >  1:1515282/1‑140 (MQ=255)
      tGCATCTTTTCAGGGTGCAAGACGATCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGc                                                                                                                                  <  1:1157963/140‑1 (MQ=255)
       gCATCTTTTCAGGGTGCAAGACGATCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCt                                                                                                                                 <  2:1524357/140‑1 (MQ=255)
        cATCTTTTCAGGGTGCAAGACGATCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGccc                                                                                                                                <  1:1062677/140‑3 (MQ=255)
        cATCTTTTCAGGGTGCAAGACGATCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTc                                                                                                                                <  2:1208906/140‑1 (MQ=255)
        cATCTTTTCAGGGTGCAAGACGATCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTc                                                                                                                                <  1:783551/140‑1 (MQ=255)
            ttttCAGGGTGCAAGACGATCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTc                                                                                                                                <  1:1256447/136‑1 (MQ=255)
            ttttCAGGGTGCAAGACGATCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTc                                                                                                                                >  2:1256447/1‑136 (MQ=255)
             tttCAGGGTGCAAGACGATCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCaa                                                                                                                           >  1:87505/1‑140 (MQ=255)
             tttCAGGGTGCAAGACGATCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCaa                                                                                                                           >  1:1047445/1‑140 (MQ=255)
               tCAGGGTGCAAGACGATCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGTCAATg                                                                                                                         <  2:988177/140‑1 (MQ=255)
               tCAGGGTGCAAGACGATCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATg                                                                                                                         <  1:663657/140‑1 (MQ=255)
                 aGGGTGCAAGACGATCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGc                                                                                                                       <  1:118556/140‑1 (MQ=255)
                    gTGCAAGACGATCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACt                                                                                                                    <  1:827068/140‑1 (MQ=255)
                      gCAAGACGATCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTc                                                                                                                  >  2:1167032/1‑140 (MQ=255)
                      gCAAGACGATCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTc                                                                                                                  >  1:283586/1‑140 (MQ=255)
                       cAAGACGATCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCg                                                                                                                 >  1:1320034/1‑140 (MQ=255)
                         aGACGATCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGcc                                                                                                               <  1:698481/140‑1 (MQ=255)
                         aGACGATCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGcc                                                                                                               <  1:810035/140‑1 (MQ=255)
                               tCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTg                                                                                                         >  2:377277/1‑140 (MQ=255)
                               tCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTg                                                                                                         <  2:1562633/140‑1 (MQ=255)
                                   tCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAAc                                                                                                     <  1:1193714/140‑1 (MQ=255)
                                   tCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAAc                                                                                                     <  1:673100/140‑1 (MQ=255)
                                           gCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCtt                                                                                             <  1:83403/140‑1 (MQ=255)
                                            catcatTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTc                                                                                            <  2:847436/140‑1 (MQ=255)
                                             atcatTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCa                                                                                           >  2:365077/1‑140 (MQ=255)
                                              tcatTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAg                                                                                          >  2:791715/1‑140 (MQ=255)
                                                 ttttCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTc                                                                                       <  2:1150133/140‑1 (MQ=255)
                                                    tCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAg                                                                                    <  2:223690/140‑1 (MQ=255)
                                                         cTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAAtt                                                                               >  2:461417/1‑140 (MQ=255)
                                                         cTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAAtt                                                                               >  2:185236/1‑140 (MQ=255)
                                                         cTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTATGCTTCAGCTCCAGGAAtt                                                                               >  2:409801/1‑140 (MQ=255)
                                                           ggTACAAAACGCGGTCATGCAGGCGATGCTCTCCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTa                                                                             <  2:968264/140‑1 (MQ=255)
                                                           ggTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTa                                                                             <  2:187478/140‑1 (MQ=255)
                                                           ggTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTa                                                                             <  1:1236185/140‑1 (MQ=255)
                                                           ggTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTa                                                                             <  1:181993/140‑1 (MQ=255)
                                                            gTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTAc                                                                            >  2:596546/1‑140 (MQ=255)
                                                               cAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACttt                                                                         <  1:700996/140‑1 (MQ=255)
                                                                    aGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAgg                                                                    >  1:77492/1‑140 (MQ=255)
                                                                    aGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAgg                                                                    >  1:421109/1‑140 (MQ=255)
                                                                    aGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAgg                                                                    >  2:998303/1‑140 (MQ=255)
                                                                      cGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGAt                                                                  >  2:845556/1‑140 (MQ=255)
                                                                       ggTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCGCCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATa                                                                 >  1:424320/1‑140 (MQ=255)
                                                                          cATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACcg                                                              <  2:1499268/140‑1 (MQ=255)
                                                                              cAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCggg                                                          <  1:1167032/140‑1 (MQ=255)
                                                                               aGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGc                                                         <  2:1515282/140‑1 (MQ=255)
                                                                                ggCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCa                                                        >  1:750029/1‑140 (MQ=255)
                                                                                    aTGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGaaa                                                    <  2:1377117/140‑1 (MQ=255)
                                                                                      gCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAACAGCTCGGCAACGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATg                                                  >  2:997477/1‑140 (MQ=255)
                                                                                      gCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATg                                                  >  1:1494567/1‑140 (MQ=255)
                                                                                         caccacCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCga                                               >  2:607802/1‑140 (MQ=255)
                                                                                              cccTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCgactgga                                          >  2:1134185/1‑140 (MQ=255)
                                                                                              cccTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCgactgga                                          <  2:998904/140‑1 (MQ=255)
                                                                                               ccTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCgactggac                                         >  1:90422/1‑140 (MQ=255)
                                                                                                cTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCgactggact                                        <  1:365077/140‑1 (MQ=255)
                                                                                                 tGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCgactggactg                                       >  2:853713/1‑140 (MQ=255)
                                                                                                 tGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCgactggactg                                       >  2:508371/1‑140 (MQ=255)
                                                                                                       aaCTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGa                                 <  2:1047445/140‑1 (MQ=255)
                                                                                                       aaCTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGa                                 <  2:87505/140‑1 (MQ=255)
                                                                                                       aaCTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGa                                 <  2:1320034/140‑1 (MQ=255)
                                                                                                       aaCTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGa                                 <  1:1290359/140‑1 (MQ=255)
                                                                                                       aaCTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGa                                 <  1:14343/140‑1 (MQ=255)
                                                                                                       aaCTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGa                                 <  1:1505545/140‑1 (MQ=255)
                                                                                                        aCTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGaa                                <  2:77492/140‑1 (MQ=255)
                                                                                                         cTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGaaa                               >  2:292188/1‑140 (MQ=255)
                                                                                                         cTCAATCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGaaa                               >  2:1247817/1‑140 (MQ=255)
                                                                                                            aaTCTGTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGAAAccc                            >  1:207498/1‑140 (MQ=255)
                                                                                                                 gTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGAAACCCATGCa                       <  1:1060960/140‑1 (MQ=255)
                                                                                                                 gTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGAAACCCATGCa                       <  1:508371/140‑1 (MQ=255)
                                                                                                                 gTTCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGAAACCCATGCa                       <  1:834039/140‑1 (MQ=255)
                                                                                                                  ttCAAGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGAAACCCATGCAc                      >  2:1322732/1‑140 (MQ=255)
                                                                                                                     aaGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGAAACCCATGCACCaa                   <  1:266375/140‑1 (MQ=255)
                                                                                                                      aGGCTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGAAACCCATGCACCAAt                  <  1:1522725/140‑1 (MQ=255)
                                                                                                                         cTGACGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGAAACCCATGCACCAATCTg               <  2:900244/140‑1 (MQ=255)
                                                                                                                            aCGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGAAACCCATGCACCAATCTGGCt            >  2:605128/1‑140 (MQ=255)
                                                                                                                            aCGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGAAACCCATGCACCAATCTGGCt            >  2:729201/1‑140 (MQ=255)
                                                                                                                            aCGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGAAACCCATGCACCAATCTGGCt            >  1:1556312/1‑140 (MQ=255)
                                                                                                                            aCGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGAAACCCATGCACCAATCTGGCt            >  1:939934/1‑140 (MQ=255)
                                                                                                                            aCGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGAAACCCATGCACCAATCTGGCt            <  1:1488216/140‑1 (MQ=255)
                                                                                                                            aCGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGAAACCCATGCACCAATCTGGCt            >  2:436331/1‑140 (MQ=255)
                                                                                                                            aCGCGAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGAAACCCATGCACCAATCTGGCt            >  2:1094032/1‑140 (MQ=255)
                                                                                                                               cgAAAACCGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGAAACCCATGCACCAATCTGGCTATc         <  1:1374092/140‑1 (MQ=255)
                                                                                                                                     ccGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGAAACCCATGCACCAATCTGGCTATCACgcgg   <  1:826391/140‑1 (MQ=255)
                                                                                                                                      cGCACCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGAAACCCATGCACCAATCTGGCTATCACgcggg  <  2:750029/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
GATTTTTGCATCTTTTCAGGGTGCAAGACGATCAATCTTCCACGCATCATTTTCACGCTGGTACAAAAAGCGGTCATGCAGGCGATGCTCACCACCCTGCCAGAACTCAATCTGTTCAAGGCTGACGCGAAAACCGCCCCAAAAGCTCGGCAATGGCACTTCGCCCTGTTGAAACTTCTGCTTCAGCTCCAGGAATTTACTTTCAAGGATACCGCGGGCAGAAATGCGACTGGACTGCTTCGAAACCCATGCACCAATCTGGCTATCACGCGGG  >  NC_000913/1717336‑1717609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A