Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F28 I1 R1 108 95.2 3177646 99.2% 3152224 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,795,996 C→T A108V (GCG→GTG)  csiR → DNA‑binding transcriptional repressor CsiR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,795,9960CT100.0% 258.5 / NA 77A108V (GCG→GTG) csiRDNA‑binding transcriptional repressor CsiR
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (41/36);  total (41/36)

GGGTATCGGGTGGCGTCTATGTCAGAGCAGGAGCTGCTCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGCGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCTGTGGTTCTCACTATTTGCTGCAAATGCGTGAACG  >  NC_000913/2795860‑2796131
                                                                                                                                        |                                                                                                                                       
gggTATCGGGTGGCGTCTATGTCAGAGCAGGAGCTGCTCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCa                                                                                                                                      <  1:512453/140‑1 (MQ=255)
 ggTATCGGGTGGCGTCTATGTCAGAGCAGGAGCTGCTCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCAt                                                                                                                                     <  1:126448/140‑1 (MQ=255)
  gTATCGGGTGGCGTCTATGTCAGAGCAGGAGCTGCTCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATc                                                                                                                                    <  2:122262/140‑1 (MQ=255)
   tATCGGGTGGCGTCTATGTCAGAGCAGGAGCTGCTCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATct                                                                                                                                   >  2:1199091/1‑140 (MQ=255)
      cGGGTGGCGTCTATGTCAGAGCAGGAGCTGCTCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATctgct                                                                                                                                <  2:1125402/140‑1 (MQ=255)
         gTGGCGTCTATGTCAGAGCAGGAGCTGCTCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAg                                                                                                                             <  2:384296/140‑1 (MQ=255)
         gTGGCGTCTATGTCAGAGCAGGAGCTGCTCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAg                                                                                                                             <  1:793668/140‑1 (MQ=255)
         gTGGCGTCTATGTCAGAGCAGGAGCTGCTCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAg                                                                                                                             <  1:471921/140‑1 (MQ=255)
           ggCGTCTATGTCAGAGCAGGAGCTGCTCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTa                                                                                                                           <  2:178273/140‑1 (MQ=255)
           ggCGTCTATGTCAGAGCAGGAGCTGCTCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTa                                                                                                                           <  2:1281233/140‑1 (MQ=255)
           ggCGTCTATGTCAGAGCAGGAGCTGCTCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTa                                                                                                                           <  1:305710/140‑1 (MQ=255)
                         agCAGGAGCTGCTCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCtgt                                                                                                             >  1:1043205/1‑140 (MQ=255)
                         agCAGGAGCTGCTCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCtgt                                                                                                             >  2:1199293/1‑140 (MQ=255)
                         agCAGGAGCTGCTCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCtgt                                                                                                             >  1:1507476/1‑140 (MQ=255)
                          gCAGGAGCTGCTCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCtgtg                                                                                                            >  1:238332/1‑140 (MQ=255)
                           cAGGAGCTGCTCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGa                                                                                                           >  2:230571/1‑140 (MQ=255)
                             ggAGCTGCTCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACg                                                                                                         >  1:882739/1‑140 (MQ=255)
                             ggAGCTGCTCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACg                                                                                                         >  1:489805/1‑140 (MQ=255)
                             ggAGCTGCTCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACg                                                                                                         >  1:36788/1‑140 (MQ=255)
                                   gctCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCg                                                                                                   >  1:1043776/1‑140 (MQ=255)
                                   gctCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCg                                                                                                   >  1:922542/1‑140 (MQ=255)
                                      cGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCgaga                                                                                                <  1:738040/140‑1 (MQ=255)
                                          atTTTCGACGCCCGCACCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAAt                                                                                            <  1:1016343/140‑1 (MQ=255)
                                           ttttCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATg                                                                                           <  2:1456797/140‑1 (MQ=255)
                                              tCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCtt                                                                                        <  1:313347/140‑1 (MQ=255)
                                                gACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTtga                                                                                      <  2:751375/140‑1 (MQ=255)
                                                      cgcgCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTg                                                                                >  1:628365/1‑140 (MQ=255)
                                                        cgcCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTAGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTggg                                                                              <  2:467752/140‑1 (MQ=255)
                                                               atGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCg                                                                       <  2:238332/140‑1 (MQ=255)
                                                                   aaGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGtcat                                                                   >  1:1051310/1‑140 (MQ=255)
                                                                   aaGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGtcat                                                                   >  1:744123/1‑140 (MQ=255)
                                                                        aTGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGc                                                              >  1:1447623/1‑140 (MQ=255)
                                                                        aTGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGc                                                              >  2:489937/1‑140 (MQ=255)
                                                                         tGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCg                                                             >  1:869369/1‑140 (MQ=255)
                                                                         tGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCg                                                             <  1:230571/140‑1 (MQ=255)
                                                                          gTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGt                                                            <  1:1199091/140‑1 (MQ=255)
                                                                             aGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTc                                                         >  2:671350/1‑140 (MQ=255)
                                                                                   tCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACgg                                                   >  2:743043/1‑140 (MQ=255)
                                                                                   tCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACgg                                                   >  2:52365/1‑140 (MQ=255)
                                                                                     tGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCa                                                 >  1:331618/1‑140 (MQ=255)
                                                                                      ggCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCaa                                                >  1:740772/1‑140 (MQ=255)
                                                                                      ggCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCaa                                                <  2:628365/140‑1 (MQ=255)
                                                                                       gCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAAt                                               >  2:1464985/1‑140 (MQ=255)
                                                                                       gCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAAt                                               >  1:1421189/1‑140 (MQ=255)
                                                                                            tGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTgg                                          <  1:947092/140‑1 (MQ=255)
                                                                                             gCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCGGCGAGAAAATGTTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGc                                         >  2:251799/1‑140 (MQ=255)
                                                                                             gCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGGTGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGc                                         >  2:775370/1‑140 (MQ=255)
                                                                                             gCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCACCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGc                                         >  1:247289/1‑140 (MQ=255)
                                                                                              cccGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCg                                        <  2:662645/140‑1 (MQ=255)
                                                                                              cccGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCg                                        <  2:922542/140‑1 (MQ=255)
                                                                                                   ggTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCtg                                   <  1:1362749/140‑1 (MQ=255)
                                                                                                   ggTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCtg                                   <  2:1374934/140‑1 (MQ=255)
                                                                                                    gTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCtgt                                  >  1:504577/1‑140 (MQ=255)
                                                                                                     tGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCtgtg                                 <  2:300098/140‑1 (MQ=255)
                                                                                                     gggCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCtgtg                                 <  2:1545341/139‑1 (MQ=255)
                                                                                                      ggCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCTGTgg                                >  2:1323569/1‑140 (MQ=255)
                                                                                                         gATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCTGTGGTtc                             <  2:848743/140‑1 (MQ=255)
                                                                                                         gATGAGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCTGTGGTtc                             <  2:1272967/140‑1 (MQ=255)
                                                                                                             aGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCTGTGGTTCTCAc                         >  1:76630/1‑140 (MQ=255)
                                                                                                             aGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCTGTGGTTCTCAc                         >  2:1234543/1‑140 (MQ=255)
                                                                                                             aGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCTGTGGGtccgac                         >  2:689502/1‑136 (MQ=255)
                                                                                                             aGTGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCCGTGGGTCTCAc                         >  2:236163/1‑140 (MQ=255)
                                                                                                               tGGGAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGCCGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCTGTGGGTCTCACTa                       >  2:374433/1‑140 (MQ=255)
                                                                                                                 ggAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCTGTGGTTCTCACTAtt                     >  2:294549/1‑140 (MQ=255)
                                                                                                                 ggAGGCAGACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCTGTGGTTCTCACTAtt                     >  2:161519/1‑140 (MQ=255)
                                                                                                                        gACGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCTGTGGTTCTCACTATTTGCTGCa              >  1:389190/1‑140 (MQ=255)
                                                                                                                         aCGTTCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCCGTGGGTCTCCCTATTTGCTGCaa             >  2:218420/1‑140 (MQ=255)
                                                                                                                            ttCTCGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCTGTGGTTCTCACTATTTGCTGCAAATg          >  1:847388/1‑140 (MQ=255)
                                                                                                                             tctcGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCTGTGGTTCTCACTATTTGCTGCAAATGc         <  2:869369/140‑1 (MQ=255)
                                                                                                                                cGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCTGTGGTTCTCACTATTTGCTGCAAATGCGTg      <  2:1043776/140‑1 (MQ=255)
                                                                                                                                cGCAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCCGGGGTTTTCCCCACTTTCTGCAAATGCggg      >  2:1373356/1‑138 (MQ=255)
                                                                                                                                  cAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCTGTGGTTCTCACTATTTGCTGCAAATGCGTGaa    <  2:740772/140‑1 (MQ=255)
                                                                                                                                  cAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCTGTGGTTCTCACTATTTGCTGCAAATGCGTGaa    <  1:71446/140‑1 (MQ=255)
                                                                                                                                  cAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCTGTGGTTCTCACTATTTGCTGCAAATGCGTGaa    <  2:1447623/140‑1 (MQ=255)
                                                                                                                                  cAAAAGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCTGTGGTTCTCACTATTTGCTGCAAATGCGTGaa    <  1:1464985/140‑1 (MQ=255)
                                                                                                                                   aaaaGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGGTGTGGTCCTCACCATTTGCTGCAAATGGGCGAAc   >  1:1174314/1‑140 (MQ=255)
                                                                                                                                   aaaaGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCTGTGGTTCTCACTATTTGCTGCAAATGCGTGAAc   <  1:52365/140‑1 (MQ=255)
                                                                                                                                    aaaGTGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCTGTGGTTCTCACTATTTGCTGCAAATGCGTGAACg  <  1:1323569/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
GGGTATCGGGTGGCGTCTATGTCAGAGCAGGAGCTGCTCGATATTTTCGACGCCCGCGCCAATATGGAAGCGATGTTAGTGAGTCTGGCGATTGCCCGCGGTGGCGATGAGTGGGAGGCAGACGTTCTCGCAAAAGCGCATCTGCTGAGTAAGCTTGAGGCCTGTGACGCCAGCGAGAAAATGCTTGATGAGTGGGATCTGCGTCATCAGGCGTTTCATACGGCAATTGTGGCGGGCTGTGGTTCTCACTATTTGCTGCAAATGCGTGAACG  >  NC_000913/2795860‑2796131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A