Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
108 |
95.2 |
3177646 |
99.2% |
3152224 |
139.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,045,986 |
Δ1 bp |
intergenic (‑85/+182) |
ygfF ← / ← gcvP |
putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,045,983 | 0 | T | . | 98.9%
| 408.5
/ ‑1.8
| 94 | intergenic (‑82/+185) | ygfF/gcvP | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base . (34/59); total (34/60) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.91e-01 |
GTTGCCCGCCCGATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAGGGGACTGTCTGAGCACTTTTGTACTTTGTCAT > NC_000913/3045852‑3046117
|
gTTGCCCGCCCGATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAATAAACTGGCTCAATCTTCAATGTTGGCACGCTTTCcccct < 1:976967/140‑2 (MQ=255)
ttGCCCGCCCGATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTc > 1:1156073/1‑140 (MQ=255)
ttGCCCGCCCGATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTc > 2:681002/1‑140 (MQ=255)
tGCCCGCCCGATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCg < 2:1567033/140‑1 (MQ=255)
tGCCCGCCCGATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCg < 1:899520/140‑1 (MQ=255)
tGCCCGCCCGATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCg < 1:1136815/140‑1 (MQ=255)
tGCCCGCCCGATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCg < 2:812747/140‑1 (MQ=255)
tGCCCGCCCGATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCg < 2:114340/140‑1 (MQ=255)
tGCCCGCCCGATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCg < 2:454048/140‑1 (MQ=255)
gcccgcccGATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGc > 2:897341/1‑140 (MQ=255)
gcccgcccGATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGc > 2:1538563/1‑140 (MQ=255)
gcccgcccGATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGc > 1:353134/1‑140 (MQ=255)
gcccgcccGATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGc > 2:148871/1‑140 (MQ=255)
gcccgcccGATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGc > 2:1443039/1‑140 (MQ=255)
gcccgcccGATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGc > 1:747062/1‑140 (MQ=255)
gcccgcccGATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGc > 1:1199782/1‑140 (MQ=255)
gcccgcccGATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGCTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGc > 2:28792/1‑140 (MQ=255)
cccgcccgATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGcc < 2:1391467/140‑1 (MQ=255)
cccgcccgATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGcc < 1:2403/140‑1 (MQ=255)
cccgcccgATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGcc < 1:270564/140‑1 (MQ=255)
cccgcccgATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGACTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGcc < 2:402783/140‑1 (MQ=255)
cgcccgCTGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCt < 2:1146082/140‑1 (MQ=255)
ccgATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTc < 1:428899/140‑1 (MQ=255)
gCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCTCGC‑TTTCCCCCTCGCCCTTTCAGGga < 1:828958/140‑1 (MQ=255)
gCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGga < 1:518522/140‑1 (MQ=255)
aCTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGc < 1:88145/140‑1 (MQ=255)
cTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGcc < 1:1187000/140‑1 (MQ=255)
gCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCgg > 2:1330983/1‑140 (MQ=255)
gCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCgg > 1:770780/1‑140 (MQ=255)
ccaccaGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCggg < 1:795399/140‑1 (MQ=255)
cccaGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGt < 2:54515/139‑1 (MQ=255)
tCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAggg < 1:85789/140‑1 (MQ=255)
acaAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTa > 2:258343/1‑140 (MQ=255)
aaGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGACACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTaaa > 1:817592/1‑140 (MQ=255)
gCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATAtt < 1:1438158/140‑1 (MQ=255)
cTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTc > 1:1531564/1‑140 (MQ=255)
cTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTc > 2:499757/1‑140 (MQ=255)
tataGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTcg > 2:163079/1‑140 (MQ=255)
taGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTcgcg > 1:1408685/1‑140 (MQ=255)
aGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCgcgc < 1:1354399/140‑1 (MQ=255)
gCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGcc > 2:199200/1‑140 (MQ=255)
aTTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGt > 1:759559/1‑140 (MQ=255)
aTTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGt > 1:1197229/1‑140 (MQ=255)
aTTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGt > 2:1448694/1‑140 (MQ=255)
tGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGcc > 1:1131874/1‑140 (MQ=255)
gTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCg < 1:258343/140‑1 (MQ=255)
ttttCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGc < 1:1069127/140‑1 (MQ=255)
tCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTg < 1:597786/140‑1 (MQ=255)
ccGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGt < 1:1538563/140‑1 (MQ=255)
gagaAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTc > 2:1352827/1‑140 (MQ=255)
aaaaaTTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTcccc < 1:681002/140‑1 (MQ=255)
aaaaTTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCt < 1:163079/140‑1 (MQ=255)
aaaaTTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCt < 1:28792/140‑1 (MQ=255)
aaaaTTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCt < 1:55908/140‑1 (MQ=255)
aaaaTTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCt < 1:698181/140‑1 (MQ=255)
ttaattCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCAcc < 1:695241/140‑1 (MQ=255)
cGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAAcc < 1:870093/140‑1 (MQ=255)
cGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAAGGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAAcc < 2:466040/140‑1 (MQ=255)
ttGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCGCGC‑TCTCCCTCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCTCCC‑TAAcccg < 2:1250144/140‑2 (MQ=255)
ttGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCct < 2:775073/140‑1 (MQ=255)
ttGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCct < 1:1443039/140‑1 (MQ=255)
ttGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCct < 2:17420/140‑1 (MQ=255)
ttGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCct < 1:1352827/140‑1 (MQ=255)
aTCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCa < 2:1156073/140‑1 (MQ=255)
cTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCaaa < 2:219835/140‑1 (MQ=255)
cTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCaaa < 1:873679/140‑1 (MQ=255)
ttGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAgg < 1:199200/140‑1 (MQ=255)
ttGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAgg < 1:148871/140‑1 (MQ=255)
gagaTTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAgggg > 2:460558/1‑140 (MQ=255)
gaTTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCg < 2:1131874/140‑1 (MQ=255)
gaTTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCg < 2:1408685/140‑1 (MQ=255)
aTTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGa < 1:885883/140‑1 (MQ=255)
ttGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAg < 2:1328498/140‑1 (MQ=255)
tGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAgg > 1:581017/1‑140 (MQ=255)
gCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAggg > 1:1391780/1‑140 (MQ=255)
gCTAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAggg > 2:1140956/1‑140 (MQ=255)
tAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAGGGGa < 1:1448694/140‑1 (MQ=255)
tAACAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAGGGGa < 2:1181272/140‑1 (MQ=255)
aaCAAACTGGCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAGGGGAc < 2:666520/140‑1 (MQ=255)
ggCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAGGGGACTGTCTGAg < 2:1199782/140‑1 (MQ=255)
ggCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAGGGGACTGTCTGAg < 1:991630/140‑1 (MQ=255)
ggCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAGGGGACTGTCTGAg < 1:971143/140‑1 (MQ=255)
ggCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAGGGGACTGTCTGAg > 1:965924/1‑140 (MQ=255)
ggCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAGGGGACTGTCTGAg < 1:919493/140‑1 (MQ=255)
ggCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAGGGGACTGTCTGAg < 2:747062/140‑1 (MQ=255)
ggCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAGGGGACTGTCTGAg > 2:567461/1‑140 (MQ=255)
ggCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAGGGGACTGTCTGAg < 1:255306/140‑1 (MQ=255)
ggCTCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATACTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAGGGGACTGTCTGAg < 1:328108/140‑1 (MQ=255)
tCAATCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAGGGGACTGTCTGAGCAc > 2:496441/1‑140 (MQ=255)
ccAATCTTCAATGGTGGC‑CCCGTTTCCCCCCCCCCCTTTCCGGGGGGGGGGCGGGGGGGGGGTAAAATTTCGCCCCAGTGCCCGCCTGGTCCCCTCCCCCTTACCCCCCCCCCCAAGGGGGCGAGGGGACTGTCTGAGCa < 2:353134/139‑1 (MQ=255)
aaTCTTCAATGTTGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAATGGGCGAGGGGACTGTCTGAGCACtt > 1:1039920/1‑140 (MQ=255)
tGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCTCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAGGGGACTGTCTGAGCACTTTTGTACTTTGTc > 2:1239630/1‑140 (MQ=255)
tGGCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAGGGGACTGTCTGAGCACTTTTGTACTTTGTc < 1:823580/140‑1 (MQ=255)
ggCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAGGGGACTGTCTGAGCACTTTTGTACTTTGTCa > 2:599071/1‑140 (MQ=255)
ggCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAGGGGACTGTCTGAGCACTTTTGTACTTTGTCa < 1:386657/140‑1 (MQ=255)
gCACGC‑TTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAGGGGACTGTCTGAGCACTTTTGTACTTTGTCAt < 1:1416415/140‑1 (MQ=255)
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GTTGCCCGCCCGATGCCGCGACTGCCACCAGTCACAAGTGCTATAGCCATTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCC‑TAACCCTCTCCCCAAAGGGGCGAGGGGACTGTCTGAGCACTTTTGTACTTTGTCAT > NC_000913/3045852‑3046117
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
