Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	108	95.2	3177646	99.2%	3152224	139.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,481,880	A→G	T198A (ACG→GCG)	yheS →	ABC transporter ATP‑binding protein YheS

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,481,880	0	A	G	100.0%	267.0 / NA	72	T198A (ACG→GCG)	yheS	ABC transporter ATP‑binding protein YheS
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (34/38); total (34/38)

GGGCTGGCGTATGCGTCTTAACCTTGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCACGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGTACACCGGCAACTACAGTTCGTTTGAAGTACAGCGCGCCACCCGTCTGGC  >  NC_000913/3481744‑3482016

gggCTGGCGTATGCGTCTTAACCTTGCCCAGGCGCTGCTTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCCCCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGgcgcgc                                                                                                                                       <  2:1235438/140‑1 (MQ=255)

gggCTGGCGTATGCGTCTTAACCTTGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGgcgcgc                                                                                                                                       <  2:954126/140‑1 (MQ=255)

 ggCTGGCGTATGCGTCTTAACCTTGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGct                                                                                                                                      >  2:735670/1‑140 (MQ=255)

     ggCGTATGCGTCTTAACCTTGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGctgatc                                                                                                                                  >  2:548195/1‑140 (MQ=255)

      gCGTATGCGTCTTAACCTTGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGctgatcc                                                                                                                                 >  1:1330873/1‑140 (MQ=255)

         tATGCGTCTTAACCTTGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCGCCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGctgatcctga                                                                                                                              <  2:1108548/140‑1 (MQ=255)

         tATGCGTCTTAACCTTGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGctgatcctga                                                                                                                              <  2:777274/140‑1 (MQ=255)

         tATGCGTCTTAACCTTGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGctgatcctga                                                                                                                              <  1:1134578/140‑1 (MQ=255)

         tATGCGTCTTAACCTTGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGctgatcctga                                                                                                                              <  1:290721/140‑1 (MQ=255)

          aTGCGTCTTAACCTTGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGctgatcctgat                                                                                                                             >  1:1181299/1‑140 (MQ=255)

           tGCGTCTTAACCTTGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGctgatcctgatc                                                                                                                            >  1:1556656/1‑140 (MQ=255)

           tGCGTCTTAACCTTGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGctgatcctgatc                                                                                                                            >  1:424205/1‑140 (MQ=255)

                cTTAACCTTGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCa                                                                                                                       >  2:1379675/1‑140 (MQ=255)

                cTTAACCTTGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCa                                                                                                                       >  2:1415729/1‑140 (MQ=255)

                     ccTTGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGAcc                                                                                                                  >  1:1434591/1‑140 (MQ=255)

                     ccTTGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGAcc                                                                                                                  >  1:338092/1‑140 (MQ=255)

                         gCCCAGGCGCTGATTTGCTGATCAGAAGTGCTGCCGCTCGAAGAACCGAATAACGACCTCGATCTCG‑ATGCCGTTATCTGGCTGGACAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGa                                                                                                              <  2:161118/140‑1 (MQ=255)

                         gCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGa                                                                                                              <  1:555010/140‑1 (MQ=255)

                         gCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGa                                                                                                              <  2:1189352/140‑1 (MQ=255)

                         gCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGa                                                                                                              <  1:1529047/140‑1 (MQ=255)

                         gCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGa                                                                                                              >  2:1446596/1‑140 (MQ=255)

                         gCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGa                                                                                                              <  1:1212449/140‑1 (MQ=255)

                          cccAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGAc                                                                                                             <  2:1330873/140‑1 (MQ=255)

                          cccAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGAc                                                                                                             >  1:452263/1‑140 (MQ=255)

                          cccAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGG‑AAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACt                                                                                                            >  2:1245832/1‑140 (MQ=255)

                               gcgcTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCt                                                                                                        >  1:669590/1‑140 (MQ=255)

                                  cTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTcga                                                                                                     >  1:1142123/1‑140 (MQ=255)

                                       ttGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTcgatccga                                                                                                <  1:548195/140‑1 (MQ=255)

                                          aggTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGAtcg                                                                                             >  1:639862/3‑140 (MQ=255)

                                             ttCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGAtcgtcg                                                                                          >  2:598291/1‑140 (MQ=255)

                                              tCAGACTTGCTGCTGCTCGACGAACCGACTAACCGCCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGa                                                                                         <  2:955943/140‑1 (MQ=255)

                                              tCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGa                                                                                         <  1:378698/140‑1 (MQ=255)

                                               cAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGAt                                                                                        >  2:166064/1‑140 (MQ=255)

                                                     tgctgctgcTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAatt                                                                                  >  1:741573/1‑140 (MQ=255)

                                                          ctgctCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCa                                                                             <  2:610713/140‑1 (MQ=255)

                                                            gctCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCata                                                                           <  2:556683/140‑1 (MQ=255)

                                                            gctCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCata                                                                           >  1:1324585/1‑140 (MQ=255)

                                                            gctCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCata                                                                           <  2:424205/140‑1 (MQ=255)

                                                               cgacgaACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCg                                                                        <  1:735670/140‑1 (MQ=255)

                                                                 acgaACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGaa                                                                      >  2:316133/1‑140 (MQ=255)

                                                                    aaCCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGaacaa                                                                   <  2:1556656/140‑1 (MQ=255)

                                                                     aCCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGaacaac                                                                  <  1:1198679/140‑1 (MQ=255)

                                                                         aCTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAATAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAg                                                              <  2:721168/140‑1 (MQ=255)

                                                                         aCTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAg                                                              >  2:312646/1‑140 (MQ=255)

                                                                          cTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGc                                                             <  1:598291/140‑1 (MQ=255)

                                                                          cTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGG‑AAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCa                                                            <  1:1245832/140‑1 (MQ=255)

                                                                           tAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCa                                                            <  2:437924/140‑1 (MQ=255)

                                                                            aaCCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCAt                                                           >  2:1127701/1‑140 (MQ=255)

                                                                            aaCCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCAt                                                           >  1:1018098/1‑140 (MQ=255)

                                                                             accaccTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATg                                                          <  2:639862/140‑1 (MQ=255)

                                                                             accaccTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATg                                                          <  1:1446596/140‑1 (MQ=255)

                                                                                 ccTCGATCTCGTATGCCGTCTTCT‑GCTTGAAAAAAAACAGAAGAGATATCAGGACGCGCTGCTCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCacggtcc                                                      >  1:907116/1‑134 (MQ=255)

                                                                                  ctcgatctcg‑atGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGa                                                     >  2:1260618/1‑140 (MQ=255)

                                                                                   tcgatctcg‑atGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAg                                                    >  1:1459617/1‑140 (MQ=255)

                                                                                   tcgatctcg‑atGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAg                                                    >  1:1326489/1‑140 (MQ=255)

                                                                                    cgatctcg‑atGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGt                                                   <  1:1078558/140‑1 (MQ=255)

                                                                                      atctcg‑atGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGTac                                                 >  2:1232063/1‑140 (MQ=255)

                                                                                       tctcg‑atGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGTaca                                                <  1:1271106/140‑1 (MQ=255)

                                                                                       tctcg‑atGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGTaca                                                <  2:1181299/140‑1 (MQ=255)

                                                                                       tctcg‑atGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGTaca                                                <  1:1379675/140‑1 (MQ=255)

                                                                                       tctcg‑atGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGTaca                                                >  1:338214/1‑140 (MQ=255)

                                                                                             atGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGTACACCGGc                                           <  2:338092/140‑1 (MQ=255)

                                                                                             atGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGTACACCGGc                                           <  2:807822/140‑1 (MQ=255)

                                                                                             atGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGTACACCGGc                                           <  2:1434591/140‑1 (MQ=255)

                                                                                                 cGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGTACACCGGCAACt                                       >  2:1063071/1‑140 (MQ=255)

                                                                                                  gTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGa                                                     <  1:470452/125‑1 (MQ=255)

                                                                                                  gTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGa                                                     >  2:470452/1‑125 (MQ=255)

                                                                                                      tCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGTACACCGGCAACTACAGt                                  <  2:669590/140‑1 (MQ=255)

                                                                                                             ggAAAAATGGCTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGTACACCGGCAACTACAGTTCGTTTg                           >  2:470063/1‑140 (MQ=255)

                                                                                                                       cTGAAGAGCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGTACACCGGCAACTACAGTTCGTTTGAAGTACAgcg                 <  1:166064/140‑1 (MQ=255)

                                                                                                                             agCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGTACACCGGCAACTACAGTTCGTTTGAAGTACAGCGCGCCAc           <  1:316133/140‑1 (MQ=255)

                                                                                                                             agCTATCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGTACACCGGCAACTACAGTTCGTTTGAAGTACAGCGCGCCAc           <  2:900529/140‑1 (MQ=255)

                                                                                                                                  tCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGTACACCGGCAACTACAGTTCGTTTGAAGTACAGCGCGCCACCCGTc      <  1:386163/140‑1 (MQ=255)

                                                                                                                                  tCAGGGCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGTACACCGGCAACTACAGTTCGTTTGAAGTACAGCGCGCCACCCGTc      <  1:1568748/140‑1 (MQ=255)

                                                                                                                                      ggCGCGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGTACACCGGCAACTACAGTTCGTTTGAAGTACAGCGCGCCACCCGTCTGgc  >  1:998464/1‑140 (MQ=255)

GGGCTGGCGTATGCGTCTTAACCTTGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCACGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGTACACCGGCAACTACAGTTCGTTTGAAGTACAGCGCGCCACCCGTCTGGC  >  NC_000913/3481744‑3482016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A