Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F28 I1 R1	123	51.0	1731148	99.3%	1719029	138.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	1,879,829	Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp	coding (115‑120/360 nt)	yeaR ←	DUF1971 domain‑containing protein YeaR

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1879829 =	0 (0.000)	51 (1.020)	37/272	0.3	100%	coding (120/360 nt)	yeaR	DUF1971 domain‑containing protein YeaR
*	?	NC_000913	2514274 =	NA (NA)	51 (1.020)	37/272	0.3	100%	noncoding (2/1345 nt)	IS186	repeat region
*	?	NC_000913	= 1879834	0 (0.000)	43 (0.860)	31/270	0.5	100%	coding (115/360 nt)	yeaR	DUF1971 domain‑containing protein YeaR
*	?	NC_000913	= 2515616	NA (NA)	43 (0.860)	31/270	0.5	100%	noncoding (1344/1345 nt)	IS186	repeat region

AGGGAAAAGGATGCTTCAAATCCCACAGAATTATATTCATACGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACcc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1879958‑1879829

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACG  >  NC_000913/2514274‑2514407

AGGGAAAAGGATGCTTCAAATCCCACAGAATTATATTCATACGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCG                                                                                                                              >  1:397337/1‑140

 GGGAAAAGGATGCTTCAAATCCCACAGAATTATATTCATACGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGC                                                                                                                             <  2:83560/140‑1

  GGAAAAGGATGCTTCAAATCCCACAGAATTATATTCATACGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCT                                                                                                                            >  2:791945/1‑140

  GGAAAAGGATGCTTCAAATCCCACAGAATTATATTCATACGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCT                                                                                                                            >  2:789874/1‑140

       AGGATGCTTCAAATCCCACAGAATTATATTCATACGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTT                                                                                                                       <  1:37050/140‑1

         GATGCTTCAAATCCCACAGAATTATATTCATACGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAA                                                                                                                     >  2:152302/1‑140

             CTTCAAATCCCACAGAATTATATTCATACGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGT                                                                                                                 >  1:480100/1‑140

               TCAAATCCCACAGAATTATATTCATACGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTG                                                                                                               <  2:397337/140‑1

               TCAAATCCCACAGAATTATATTCATACGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTG                                                                                                               <  1:791945/140‑1

                       CACAGAATTATATTCATACGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTAT                                                                                                         >  2:839037/1‑138

                       CACAGAATTATATTCATACGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTAT                                                                                                         <  1:839037/138‑1

                        ACAGAATTATATTCATACGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTAC                                                                                                      >  1:613121/1‑140

                               TATATTCATACGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGAT                                                                                               >  2:253357/1‑140

                                      ATACGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT                                                                                        >  2:400710/1‑140

                                      ATACGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTT                                                                                        >  1:502666/1‑140

                                      ATACGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATA                                                                                              >  1:596595/1‑134

                                      ATACGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATA                                                                                              <  2:596595/134‑1

                                        ACGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAA                                                                                      >  1:793864/1‑140

                                        ACGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAA                                                                                      >  1:524962/1‑140

                                         CGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAAC                                                                                     <  2:480100/140‑1

                                           CGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACG                                                                                    >  1:356132/1‑139

                                           CGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACG                                                                                    <  2:356132/139‑1

                                            GCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTG                                                                                  <  1:524998/140‑1

                                             CTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGC                                                                                 <  2:352438/140‑1

                                                  CGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATG                                                                            <  2:199736/140‑1

                                                       TTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTA                                                                       >  1:457678/1‑140

                                                         CTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACT                                                                     <  2:524962/140‑1

                                                         CTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACT                                                                     <  1:400710/140‑1

                                                         CTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACT                                                                     <  1:253357/140‑1

                                                                 AACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGAT                                                             >  1:671312/1‑140

                                                                   CAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAA                                                           <  1:152302/140‑1

                                                                      ACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTG                                                        <  1:789874/140‑1

                                                                                    AATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGG                                          <  2:779327/140‑1

                                                                                     ATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC                                         <  2:14948/140‑1

                                                                                     ATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC                                         <  2:457678/140‑1

                                                                                     ATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC                                         <  2:740332/140‑1

                                                                                     ATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC                                         <  2:671312/140‑1

                                                                                      TATTCGAACGTCATCTTGATAAAGGAACGCGCCCGGGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGC                                         <  2:607717/140‑1

                                                                                              CGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGG                                <  2:517478/140‑1

                                                                                                      TGATAAAGGAACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCG                        <  2:613121/140‑1

                                                                                                               AACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGG               >  1:788294/1‑140

                                                                                                               AACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACACTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGG               >  2:235358/1‑140

                                                                                                                ACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGA              <  1:591278/140‑1

                                                                                                                ACGCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGA              <  1:44759/140‑1

                                                                                                                  GCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATA            >  1:74148/1‑140

                                                                                                                  GCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATA            >  2:748706/1‑140

                                                                                                                  GCGCCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACACTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATA            <  1:235358/140‑1

                                                                                                                     CCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAA                      <  2:541040/127‑1

                                                                                                                     CCC‑GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAA                      >  1:541040/1‑127

                                                                                                                         GGGGGTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGG      <  2:502666/140‑1

                                                                                                                             GTTTACCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACG  <  2:793864/140‑1

AGGGAAAAGGATGCTTCAAATCCCACAGAATTATATTCATACGCGCTCAACGCCTTTCTGGAATAAACAAACTGCACCTGCCGGAATATTCGAACGTCATCTTGATAAAGGAACGCGCCC‑GGGGGTTTACcc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1879958‑1879829

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACG  >  NC_000913/2514274‑2514407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.

GATK/CNVnator alignment

N/A