Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F28 I1 R1 123 51.0 1731148 99.3% 1719029 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,012,563 (G)6→7 pseudogene (62/279 nt) intG → putative defective phage integrase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,012,5571.G100.0% 226.0 / NA 62pseudogene (56/279 nt)intGputative defective phage integrase
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (29/33);  total (29/33)

TCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAA  >  NC_000913/2012418‑2012686
                                                                                                                                            |                                                                                                                                 
tCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCa                                                                                                                                    >  2:582409/1‑140 (MQ=255)
  aaaaaTCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTCACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑gg                                                                                                                                 <  2:380261/140‑1 (MQ=255)
        cGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑gggggggt                                                                                                                           >  1:812890/1‑138 (MQ=255)
          cTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑gggggggtta                                                                                                                         >  1:114576/1‑136 (MQ=255)
           tCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑gggggggttat                                                                                                                        <  2:129010/140‑6 (MQ=255)
            cATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCTGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATc                                                                                                                        <  1:326631/140‑1 (MQ=255)
             atatCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATcg                                                                                                                       <  1:473964/140‑1 (MQ=255)
             atatCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATcg                                                                                                                       <  1:299167/140‑1 (MQ=255)
                   aTCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGtata                                                                                                                 <  2:3215/140‑1 (MQ=255)
                   aTCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGtata                                                                                                                 <  1:409425/140‑1 (MQ=255)
                     cGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑gggg                                                                                                                               <  1:161023/123‑1 (MQ=255)
                     cGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑gggg                                                                                                                               >  2:161023/1‑123 (MQ=255)
                       cccGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTATGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGa                                                                                                             >  2:597833/1‑140 (MQ=255)
                        ccGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGAt                                                                                                            >  2:519437/1‑140 (MQ=255)
                         cGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATc                                                                                                           <  2:288926/140‑1 (MQ=255)
                         cGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATc                                                                                                           >  1:451565/1‑140 (MQ=255)
                             atatGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTgg                                                                                                       <  2:114576/140‑1 (MQ=255)
                                 gAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATgg                                                                                                   >  2:360303/1‑140 (MQ=255)
                                      aaaaCATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGaa                                                                                              >  1:396554/1‑140 (MQ=255)
                                      aaaaCATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGaa                                                                                              >  1:319759/1‑140 (MQ=255)
                                      aaaaCATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGAGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGAGGATGGCAGaa                                                                                              >  2:615766/1‑140 (MQ=255)
                                          cATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACg                                                                                          <  2:319759/140‑1 (MQ=255)
                                            tCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGtt                                                                                        >  1:645415/1‑140 (MQ=255)
                                            tCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGtt                                                                                        >  2:717796/1‑140 (MQ=255)
                                               acaaAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAg                                                                                     >  1:614533/1‑140 (MQ=255)
                                                caaAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAgg                                                                                    <  2:396554/140‑1 (MQ=255)
                                                  aaGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGTAGAAAACGTTCAGGAt                                                                                  <  2:541808/140‑1 (MQ=255)
                                                  aaGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGAt                                                                                  <  1:717796/140‑1 (MQ=255)
                                                  aaGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGAt                                                                                  <  1:519437/140‑1 (MQ=255)
                                                                   agGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTaaa                                                                 >  2:633993/1‑140 (MQ=255)
                                                                   agGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGCATCCATTTTaaa                                                                 >  2:233718/1‑140 (MQ=255)
                                                                        aCTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGa                                                            >  1:329868/1‑140 (MQ=255)
                                                                          tGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGaaa                                                          <  1:582409/140‑1 (MQ=255)
                                                                          tGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGaaa                                                          <  2:812890/140‑1 (MQ=255)
                                                                               cGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATtgag                                                     >  1:320738/1‑140 (MQ=255)
                                                                                 tCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATtgagtg                                                   >  2:61627/1‑140 (MQ=255)
                                                                                 tCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATtgag                                                     >  2:407968/1‑138 (MQ=255)
                                                                                 tCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATtgag                                                     <  1:407968/138‑1 (MQ=255)
                                                                                    gtgGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTgagtgagt                                                <  2:358107/140‑1 (MQ=255)
                                                                                        tCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGc                                            >  1:752884/1‑140 (MQ=255)
                                                                                          gTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGccc                                          <  1:633993/140‑1 (MQ=255)
                                                                                          gTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGCATCCATTTTAAACCAGAAATTGAGTGAGTTTGccc                                          <  1:233718/140‑1 (MQ=255)
                                                                                           tAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTgagtgagt                                                >  2:415657/1‑133 (MQ=255)
                                                                                           tAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTgagtgagt                                                <  1:415657/133‑1 (MQ=255)
                                                                                             acaacaTCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCccat                                       <  2:645415/140‑1 (MQ=255)
                                                                                               aacaTCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCccatcc                                     <  2:451565/140‑1 (MQ=255)
                                                                                                  aTCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATg                                  >  2:206527/1‑140 (MQ=255)
                                                                                                  aTCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATg                                  >  2:265341/1‑140 (MQ=255)
                                                                                                    ccGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGcc                                           <  1:764533/129‑1 (MQ=255)
                                                                                                    ccGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTACAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGcc                                           >  2:764533/1‑129 (MQ=255)
                                                                                                       aCGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCa                             <  1:62984/140‑1 (MQ=255)
                                                                                                           ggtgATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCAcgcg                         >  1:660983/1‑140 (MQ=255)
                                                                                                             tgATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGt                       <  1:360303/140‑1 (MQ=255)
                                                                                                              gATGTGTCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTg                      <  1:206527/140‑1 (MQ=255)
                                                                                                                 gtgtCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTgaga                   <  1:61627/140‑1 (MQ=255)
                                                                                                                  tgtCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGAt                  <  1:265341/140‑1 (MQ=255)
                                                                                                                    tCAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCg                >  2:517306/1‑140 (MQ=255)
                                                                                                                     cAAATGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCgg               <  2:752884/140‑1 (MQ=255)
                                                                                                                       aaTGAGACGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGAt             >  1:422692/1‑140 (MQ=255)
                                                                                                                          gagaCGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTa          <  1:134146/140‑1 (MQ=255)
                                                                                                                           agaCGCTCCGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGAt                  <  1:177192/131‑1 (MQ=255)
                                                                                                                           agaCGCTCCGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGAt                  >  2:177192/1‑131 (MQ=255)
                                                                                                                            gaCGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAAt        <  2:614533/140‑1 (MQ=255)
                                                                                                                              cGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAAtt       <  1:310219/139‑1 (MQ=255)
                                                                                                                              cGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAAtt       >  2:310219/1‑139 (MQ=255)
                                                                                                                              cGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTa      >  1:428925/1‑140 (MQ=255)
                                                                                                                              cGCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTa      >  2:363756/1‑140 (MQ=255)
                                                                                                                               gCTCTGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTaa     <  1:615766/140‑1 (MQ=255)
                                                                                                                                  ctGATGTTCAGGGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTaacaa  >  1:3382/1‑140 (MQ=255)
                                                                                                                                            |                                                                                                                                 
TCAAAAATCGCTCATATCCATCGCCCGGAATATGAATAAAAACATCAACAAAGATTAAATTATCCAGAGGTTACTGTTGCGTCTGTGGTCGTAACAACATCCGACGTGGTGATGTGTCAAATGAGACGCTCTGATGTTCA‑GGGGGGTTATCGCGTATACGGATCGTGGATGGCAGAAAACGTTCAGGATCAGGTATCCATTTTAAACCAGAAATTGAGTGAGTTTGCCCCATCCATGCCCCACGCGGTGAGATCGGATGTAATTAACAA  >  NC_000913/2012418‑2012686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A