Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A23 F60 I1 R1 17 145.5 4959514 98.5% 4885121 138.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,551,769 T→A I45N (ATC→AAC)  uxuA → D‑mannonate dehydratase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,551,7690TA100.0% 651.6 / NA 185I45N (ATC→AAC) uxuAD‑mannonate dehydratase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (75/110);  total (75/110)

Only 100 of 185 total aligned reads displayed.

ATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTGCG  >  NC_000913/4551633‑4551904
                                                                                                                                        |                                                                                                                                       
   aTGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCaa                                                                                                                                   <  2:211714/140‑1 (MQ=255)
      gAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACg                                                                                                                                <  2:1789491/140‑1 (MQ=255)
       aaCAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGc                                                                                                                               <  2:172136/140‑1 (MQ=255)
         cAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCaa                                                                                                                             >  1:839211/1‑140 (MQ=255)
            aCCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGc                                                                                                                          >  1:519465/1‑140 (MQ=255)
            aCCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGc                                                                                                                          >  1:2453378/1‑140 (MQ=255)
              cTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCTAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGa                                                                                                                        <  1:581712/140‑1 (MQ=255)
                 gcgcTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCa                                                                                                                     >  1:1075805/1‑140 (MQ=255)
                 gcgcTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCa                                                                                                                     >  2:1663587/1‑140 (MQ=255)
                    cTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTg                                                                                                                  >  1:2032406/1‑140 (MQ=255)
                    cTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTACGTTGAAGAGAACCTCAAACGCAAGGCGATCATTg                                                                                                                  >  1:326867/1‑140 (MQ=255)
                      ggTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAgg                                                                                                                           <  2:1045451/129‑1 (MQ=255)
                      ggTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAgg                                                                                                                           >  1:539654/1‑129 (MQ=255)
                      ggTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAgg                                                                                                                           <  2:539654/129‑1 (MQ=255)
                      ggTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAgg                                                                                                                           <  2:1509389/129‑1 (MQ=255)
                      ggTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAgg                                                                                                                           >  1:1509389/1‑129 (MQ=255)
                        tACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGa                                                                                                              <  2:512639/140‑1 (MQ=255)
                          cGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACg                                                                                                            <  1:1993565/140‑1 (MQ=255)
                          cGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACg                                                                                                            <  2:303329/140‑1 (MQ=255)
                          cGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACg                                                                                                            <  1:130510/140‑1 (MQ=255)
                          cGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACg                                                                                                            <  1:125935/140‑1 (MQ=255)
                           ggCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGa                                                                                                                 <  2:1815899/134‑1 (MQ=255)
                           ggCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGa                                                                                                                 >  1:1815899/1‑134 (MQ=255)
                           ggCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGc                                                                                                           >  1:404291/1‑140 (MQ=255)
                             cccAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCg                                                                                                                         <  2:2439268/124‑1 (MQ=255)
                             cccAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAg                                                                                                         >  2:338319/1‑140 (MQ=255)
                               cAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGc                                                                                                       <  2:1148902/140‑1 (MQ=255)
                                aaaCGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGcc                                                                                                      <  2:1456565/140‑1 (MQ=255)
                                 aaCGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCt                                                                                                     >  2:1300864/1‑140 (MQ=255)
                                 aaCGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCt                                                                                                     >  2:1026299/1‑140 (MQ=255)
                                 aaCGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCt                                                                                                     >  2:605475/1‑140 (MQ=255)
                                    gATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGgt                                                                                                  <  1:1823975/140‑1 (MQ=255)
                                    gATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGgt                                                                                                  <  1:605475/140‑1 (MQ=255)
                                       ccGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGtgtg                                                                                               >  2:1365857/1‑140 (MQ=255)
                                       ccGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGtgtg                                                                                               >  1:713017/1‑140 (MQ=255)
                                         ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGt                                                                                             <  1:695025/140‑1 (MQ=255)
                                         ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGt                                                                                             <  1:637126/140‑1 (MQ=255)
                                         ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGt                                                                                             <  2:1566888/140‑1 (MQ=255)
                                         ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGt                                                                                             <  2:519465/140‑1 (MQ=255)
                                         ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGt                                                                                             <  1:1026299/140‑1 (MQ=255)
                                         ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGt                                                                                             <  1:1625117/140‑1 (MQ=255)
                                         ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGt                                                                                             <  1:2317790/140‑1 (MQ=255)
                                         ggTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATAGAAGACGCAGGCCTGGTGTGGt                                                                                             <  2:2423092/140‑1 (MQ=255)
                                              cTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTc                                                                                        >  2:1629044/1‑140 (MQ=255)
                                                 tAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTa                                                                                     >  2:2416883/1‑140 (MQ=255)
                                                     tGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGaaa                                                                                 >  2:2083367/1‑140 (MQ=255)
                                                       aTGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGt                                                                                             >  1:1789938/1‑126 (MQ=255)
                                                       aTGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGc                                                                               >  2:896844/1‑140 (MQ=255)
                                                       aTGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGc                                                                               >  1:364725/1‑140 (MQ=255)
                                                       aTGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGc                                                                               >  2:2143233/1‑140 (MQ=255)
                                                       aTGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGc                                                                               >  2:1078051/1‑140 (MQ=255)
                                                        tGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGt                                                                                             <  1:2069114/125‑1 (MQ=255)
                                                         gTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGt                                                                                             <  1:1652571/124‑1 (MQ=255)
                                                         gTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGt                                                                                             >  2:1652571/1‑124 (MQ=255)
                                                         gTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCt                                                                                           >  1:954637/1‑126 (MQ=255)
                                                         gTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGt                                                                             >  1:2242920/1‑140 (MQ=255)
                                                            cGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGcc                                                                          <  1:2213759/140‑1 (MQ=255)
                                                            cGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGcc                                                                          <  1:1663587/140‑1 (MQ=255)
                                                              tCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCaa                                                                        >  2:2342660/1‑140 (MQ=255)
                                                                aGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAAtt                                                                      <  1:896844/140‑1 (MQ=255)
                                                                    gggcgCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACg                                                                  <  1:2083367/140‑1 (MQ=255)
                                                                    gggcgCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACg                                                                  <  2:713017/140‑1 (MQ=255)
                                                                        gcAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGa                                                              <  1:1091943/140‑1 (MQ=255)
                                                                                  tGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAAcc                                                    >  2:1894958/1‑140 (MQ=255)
                                                                                   ggTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAAccc                                                   <  2:2052250/140‑1 (MQ=255)
                                                                                    gTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCca                                                  <  1:1006823/140‑1 (MQ=255)
                                                                                          gcgcTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTgg                                            <  1:2416883/140‑1 (MQ=255)
                                                                                          gcgcTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTgg                                            >  2:1929432/1‑140 (MQ=255)
                                                                                            gcTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCa                                          >  2:681509/1‑140 (MQ=255)
                                                                                            gcTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCa                                          <  2:1761861/140‑1 (MQ=255)
                                                                                              tGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAAc                                        >  2:1386964/1‑140 (MQ=255)
                                                                                                 aCCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTAt                                     <  1:1472865/140‑1 (MQ=255)
                                                                                                 aCCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTAt                                     <  1:1445142/140‑1 (MQ=255)
                                                                                                 aCCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTAt                                     <  1:1929432/140‑1 (MQ=255)
                                                                                                 aCCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTAt                                     <  1:21278/140‑1 (MQ=255)
                                                                                                     tatCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGc                                 <  1:2143233/140‑1 (MQ=255)
                                                                                                      atCCCGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCa                                >  2:648755/1‑140 (MQ=255)
                                                                                                          cGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTgg                                            <  1:1744796/124‑1 (MQ=255)
                                                                                                          cGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTgg                            >  2:2024107/1‑140 (MQ=255)
                                                                                                          cGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTgg                            >  2:258895/1‑140 (MQ=255)
                                                                                                          cGAACGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTg                             <  2:250062/139‑1 (MQ=255)
                                                                                                            aaCGGCGAAGTATGGTCCGTTGAAGAGCACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGAAGTGGAt                          >  1:263162/1‑140 (MQ=255)
                                                                                                             aCGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATc                         >  2:2094843/1‑140 (MQ=255)
                                                                                                             aCGGCGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCAGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATc                         >  1:872765/1‑140 (MQ=255)
                                                                                                                 cGAAGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTa                     <  1:1386964/140‑1 (MQ=255)
                                                                                                                   aaGTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAAc                   <  1:408220/140‑1 (MQ=255)
                                                                                                                     gTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTa                 <  1:1140383/140‑1 (MQ=255)
                                                                                                                     gTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTa                 <  2:2160264/140‑1 (MQ=255)
                                                                                                                     gTATGGTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTa                 <  1:2298330/140‑1 (MQ=255)
                                                                                                                          gTCCGTTGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATcagc            <  1:1371349/140‑1 (MQ=255)
                                                                                                                                tGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACATTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGActc      >  1:127499/1‑140 (MQ=255)
                                                                                                                                tGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGc                       >  1:1342714/1‑123 (MQ=255)
                                                                                                                                tGAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGc                       <  2:1342714/123‑1 (MQ=255)
                                                                                                                                 gAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGActct     <  1:2094843/140‑1 (MQ=255)
                                                                                                                                 gAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGActct     <  1:1212804/140‑1 (MQ=255)
                                                                                                                                 gAAGAGAACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCAGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGActct     <  2:872765/140‑1 (MQ=255)
                                                                                                                                    gagaACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACATTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTgcg  <  2:127499/140‑1 (MQ=255)
                                                                                                                                    gagaACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTgcg  <  1:648755/140‑1 (MQ=255)
                                                                                                                                    gagaACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTgcg  <  1:2036811/140‑1 (MQ=255)
                                                                                                                                    gagaACCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTgcg  <  2:839211/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
ATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCACCATATCCCGAACGGCGAAGTATGGTCCGTTGAAGAGATCCTCAAACGCAAGGCGATCATTGAAGACGCAGGCCTGGTGTGGTCTGTCGTAGAAAGCGTGCCAATTCACGAAGATATCAAAACCCACACTGGCAACTATGAGCAGTGGATCGCTAACTATCAGCAGACTCTGCG  >  NC_000913/4551633‑4551904

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A