Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A25 F60 I1 R1 14 108.0 3679756 98.7% 3631919 138.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,241,459 T→C T266A (ACC→GCC)  xylE ← D‑xylose:H(+) symporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,241,4590TC100.0% 477.9 / NA 122T266A (ACC→GCC) xylED‑xylose:H(+) symporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (61/61);  total (61/61)

Only 100 of 126 total aligned reads displayed.

GTGCTGGCCCCCAGCGTTTTGAACACTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGTTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGCGACATCAGCCAGCGAGGACTTTCTGG  >  NC_000913/4241323‑4241594
                                                                                                                                        |                                                                                                                                       
gTGCTGGCCCCCAGCGTTTTGAACACTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGcttt                                                                                                                                      >  2:1128582/1‑140 (MQ=255)
     ggCCCCCAGCGTTTTGAACACTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGc                                                                                                                                 >  1:474924/1‑140 (MQ=255)
      gCCCCCAGCGTTTTGAACACTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGcc                                                                                                                                <  1:990958/140‑1 (MQ=255)
      gCCCCCAGCGTTTTGAACACTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGcc                                                                                                                                <  1:1128582/140‑1 (MQ=255)
      gCCCCCAGCGTTTTGAACACTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGcc                                                                                                                                <  2:474924/140‑1 (MQ=255)
      gCCCCCAGCGTTTTGAACACTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGcc                                                                                                                                <  1:1337913/140‑1 (MQ=255)
      gCCCCCAGCGTTTTGAACACTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGcc                                                                                                                                <  2:683108/140‑1 (MQ=255)
        ccccAGCGTTTTGAACACTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCAt                                                                                                                              <  2:1830733/140‑1 (MQ=255)
        ccccAGCGTTTTGAACACTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCAt                                                                                                                              <  1:799794/140‑1 (MQ=255)
        ccccAGCGTTTTGAACACTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCAt                                                                                                                              <  2:1278842/140‑1 (MQ=255)
        ccccAGCGTTTTGAACACTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCAt                                                                                                                              <  2:1418704/140‑1 (MQ=255)
           cAGCGTTTTGAACACTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGAt                                                                                                                           >  1:1655986/1‑140 (MQ=255)
                ttttGAACACTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAgg                                                                                                                      <  1:786581/140‑1 (MQ=255)
                    gAACACTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAgt                                                                                                                  <  1:739176/140‑1 (MQ=255)
                         cTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTa                                                                                                             <  1:1208652/140‑1 (MQ=255)
                         cTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTa                                                                                                             >  2:1566460/1‑140 (MQ=255)
                          ttCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTaa                                                                                                            >  2:1160360/1‑140 (MQ=255)
                           tCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAAt                                                                                                           >  2:1641638/1‑140 (MQ=255)
                            ccGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAAtt                                                                                                          >  2:309370/1‑140 (MQ=255)
                            ccGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAAtt                                                                                                          >  2:413123/1‑140 (MQ=255)
                                   gtagtaCAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTa                                                                                                   <  1:1566460/140‑1 (MQ=255)
                                    tagtaCAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTc                                                                                                        >  1:1022812/1‑134 (MQ=255)
                                    tagtaCAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTc                                                                                                        >  1:1724451/1‑134 (MQ=255)
                                    tagtaCAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTAc                                                                                                  >  2:1172318/1‑140 (MQ=255)
                                    tagtaCAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTAc                                                                                                  >  1:1702805/1‑140 (MQ=255)
                                    tagtaCAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTAc                                                                                                  >  1:1296413/1‑140 (MQ=255)
                                     agtaCAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTCCGCCGATTACAATCACGCCCACGCCAAAGATCAGCAGACGTCCACCGGCTTTGCGGCCATGAGCCAGGGAGTGTTTAATTTCCTGTACt                                                                                                 <  2:1305590/140‑1 (MQ=255)
                                      gtaCAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTa                                                                                                             >  2:1205817/1‑127 (MQ=255)
                                        aCAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGcc                                                                                              <  2:877080/140‑1 (MQ=255)
                                            caccacATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTc                                                                                                        <  2:102906/126‑1 (MQ=255)
                                            caccacATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTc                                                                                                        >  1:102906/1‑126 (MQ=255)
                                            caccacATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAg                                                                                          <  2:1196730/140‑1 (MQ=255)
                                            caccacATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAg                                                                                          >  1:1541724/1‑140 (MQ=255)
                                             accacATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGt                                                                                         <  1:614380/140‑1 (MQ=255)
                                               cacaTTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTg                                                                                       >  2:1441562/1‑140 (MQ=255)
                                               cacaTTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTg                                                                                       >  2:909134/1‑140 (MQ=255)
                                               cacaTTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTg                                                                                       <  1:1617076/140‑1 (MQ=255)
                                                 caTTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGt                                                                                                    <  2:1137013/125‑1 (MQ=255)
                                                 caTTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAg                                                                                          <  2:741678/135‑1 (MQ=255)
                                                 caTTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAg                                                                                          >  1:741678/1‑135 (MQ=255)
                                                 caTTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCa                                                                                     <  2:1541724/140‑1 (MQ=255)
                                                 caTTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCa                                                                                     >  1:722833/1‑140 (MQ=255)
                                                 caTTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCa                                                                                     >  1:1550483/1‑140 (MQ=255)
                                                 caTTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCa                                                                                     <  2:47753/140‑1 (MQ=255)
                                                 caTTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCa                                                                                     >  1:1256035/1‑140 (MQ=255)
                                                  aTTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCaa                                                                                    <  1:909134/140‑1 (MQ=255)
                                                    tGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGc                                                                                  >  1:510899/1‑140 (MQ=255)
                                                      aTGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCgt                                                                                >  1:1207462/1‑140 (MQ=255)
                                                         ccGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGtt                                                                             <  1:1316009/140‑1 (MQ=255)
                                                           gACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGc                                                                           >  1:1205963/1‑140 (MQ=255)
                                                            aCAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGcc                                                                          >  1:1192139/1‑140 (MQ=255)
                                                            aCAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGcc                                                                          >  2:1195037/1‑140 (MQ=255)
                                                            aCAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGcc                                                                          >  2:588665/1‑140 (MQ=255)
                                                                     tGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAAtttt                                                                 <  2:1702805/140‑1 (MQ=255)
                                                                       gAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTgc                                                               <  1:1483858/140‑1 (MQ=255)
                                                                        aaGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTgcg                                                              >  2:911400/1‑140 (MQ=255)
                                                                         aGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTgcgc                                                             <  1:309370/140‑1 (MQ=255)
                                                                         aGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTgcgc                                                             <  1:413123/140‑1 (MQ=255)
                                                                         aGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTgcgc                                                             <  2:56084/140‑1 (MQ=255)
                                                                             ggAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGa                                                         <  1:469367/140‑1 (MQ=255)
                                                                             ggAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGa                                                         <  2:1712552/140‑1 (MQ=255)
                                                                                 agCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATAcc                                                     >  2:392722/1‑140 (MQ=255)
                                                                                  gCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCt                                                    <  2:1655986/140‑1 (MQ=255)
                                                                                      tACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCg                                                <  1:1195841/140‑1 (MQ=255)
                                                                                      tACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCg                                                >  1:1705891/1‑140 (MQ=255)
                                                                                        cGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGc                                               <  2:1645556/139‑1 (MQ=255)
                                                                                        cGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGc                                               >  1:1645556/1‑139 (MQ=255)
                                                                                          ccGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTg                                            <  1:1160360/140‑1 (MQ=255)
                                                                                          ccGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTg                                            <  2:200402/140‑1 (MQ=255)
                                                                                          ccGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTg                                            <  1:469687/140‑1 (MQ=255)
                                                                                          ccGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTg                                            <  2:1192139/140‑1 (MQ=255)
                                                                                          ccGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTg                                            <  2:1205963/140‑1 (MQ=255)
                                                                                             aTTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTc                                         >  1:1290258/1‑140 (MQ=255)
                                                                                             aTTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTc                                         >  1:535649/1‑140 (MQ=255)
                                                                                             aTTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAA‑TTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGc                                               >  1:1210268/1‑133 (MQ=255)
                                                                                             aTTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAA‑TTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGc                                               <  2:1210268/133‑1 (MQ=255)
                                                                                                      acgcccacgccAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGcc                                >  1:601480/1‑140 (MQ=255)
                                                                                                       cgcccacgccAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTg                                            <  2:1248805/127‑1 (MQ=255)
                                                                                                       cgcccacgccAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTg                                            >  1:1248805/1‑127 (MQ=255)
                                                                                                        gcccacgccAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGc                                               >  1:1657269/1‑123 (MQ=255)
                                                                                                        gcccacgccAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGc                                               <  2:1657269/123‑1 (MQ=255)
                                                                                                         cccacgccAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCcgcg                             >  1:1002116/1‑140 (MQ=255)
                                                                                                         cccacgccAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCcgcg                             <  2:1524744/140‑1 (MQ=255)
                                                                                                         cccacgccAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCcgcg                             >  1:930188/1‑140 (MQ=255)
                                                                                                              gccAAACATCAGCAGACGACCACCGGCTTTGCGGCCATGATCCAGGAAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGCGACa                        >  1:1152999/1‑140 (MQ=255)
                                                                                                                        agcagACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGCGACATCAGCCAGCg              >  2:1116764/1‑140 (MQ=255)
                                                                                                                        agcagACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGCGACATCAGCCAGCg              >  1:374700/1‑140 (MQ=255)
                                                                                                                        agcagACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGCGACATCAGCCAGCg              >  1:94473/1‑140 (MQ=255)
                                                                                                                        agcagACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGCGACATCAGCCAGCg              >  2:1399753/1‑140 (MQ=255)
                                                                                                                        agcagACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGCGACATCAGCCAGCg              >  2:1215308/1‑140 (MQ=255)
                                                                                                                          cagACGACCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGCGACATCAGCCAGCGAg            >  1:1750112/1‑140 (MQ=255)
                                                                                                                            gacgacCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGCGACATCAGCCAGCGAGGa          <  1:392722/140‑1 (MQ=255)
                                                                                                                               gacCACCGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGCGACATCAGCCAGCGAGGACtt       >  1:756996/1‑140 (MQ=255)
                                                                                                                                  caccGGCTTTGCGGTCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGCGACATCAGCCAGCGAGGACTTTCt    >  2:1693882/1‑140 (MQ=255)
                                                                                                                                  caccGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGCGACATcagccag                >  1:1444288/1‑128 (MQ=255)
                                                                                                                                  caccGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGCGACATcagccag                <  2:1444288/128‑1 (MQ=255)
                                                                                                                                   accGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGCGACATCAGCCAGCGAGGACTTTCTg   <  1:936363/140‑1 (MQ=255)
                                                                                                                                   accGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGCGACATCAGCCAGCGAGGACTTTCTg   <  2:1705891/140‑1 (MQ=255)
                                                                                                                                    ccGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGCGACATCAGCCAGCGAGGACTTTCTgg  >  1:463277/1‑140 (MQ=255)
                                                                                                                                    ccGGCTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGCGACATCAGCCAGCGAGGACTTTCTgg  >  2:183191/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                       
GTGCTGGCCCCCAGCGTTTTGAACACTTCCGGCGCGTAGTACAGCACCACATTGATGCCGACAAATTGCTGGAAGATGGAGAGCATTACGCCGATTACAATCACGCCCACGCCAAACATCAGCAGACGACCACCGGTTTTGCGGCCATGATCCAGGGAGTGTTTAATTTCCTGTACTGCCTGAGTTGCAAGCGTGTTGCCCATAATTTTGCGCAGGATACCTTCCGCCTGTTCTTGCTTGCCGCGCGACATCAGCCAGCGAGGACTTTCTGG  >  NC_000913/4241323‑4241594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A