Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A44 F60 I1 R1 17 93.7 3192976 98.9% 3157853 138.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,605,444 A→G T132A (ACG→GCG)  lsrB → Autoinducer‑2 ABC transporter periplasmic binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,605,4440AG100.0% 272.2 / NA 72T132A (ACG→GCG) lsrBAutoinducer‑2 ABC transporter periplasmic binding protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (30/42);  total (30/42)

CGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAACGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGACCAAAACCAGTGGGTGAAAGAAGCGAA  >  NC_000913/1605308‑1605574
                                                                                                                                        |                                                                                                                                  
cGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAgcgc                                                                                                                                 <  1:474638/140‑1 (MQ=255)
cGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAgcgc                                                                                                                                 <  2:364107/140‑1 (MQ=255)
   cATTATCGTTTCTGCGGTTTCGCCTGATGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGcgcccg                                                                                                                              <  2:1271599/140‑1 (MQ=255)
   cATTATCGTTTCTGCGGTTTCGCCTGATGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGcgcccg                                                                                                                              >  1:462503/1‑140 (MQ=255)
    aTTATCGTTTCTGCGGTTTCGCCTGATGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGcgccc                                                                                                                               >  1:626580/1‑138 (MQ=255)
    aTTATCGTTTCTGCGGTTTCGCCTGATGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGcgccc                                                                                                                               <  2:626580/138‑1 (MQ=255)
     ttATCGTTTCTGCGGTTTCGCCTGATGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGcgcccgcc                                                                                                                            <  1:1045513/140‑1 (MQ=255)
     ttATCGTTTCTGCGGTTTCGCCTGATGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGcgcccgcc                                                                                                                            <  2:462503/140‑1 (MQ=255)
             tCTGCGGTTTCGCCTGATGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTagg                                                                                                                    >  2:982025/1‑140 (MQ=255)
               tGCGGTTTCGCCTGATGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTaggag                                                                                                                  <  1:637240/140‑1 (MQ=255)
                gCGGTTTCGCCTGATGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTaggagg                                                                                                                 <  1:1267899/140‑1 (MQ=255)
                 cGGTTTCGCCTGATGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGtt                                                                                                                       <  1:225612/133‑1 (MQ=255)
                 cGGTTTCGCCTGATGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGtt                                                                                                                       >  2:225612/1‑133 (MQ=255)
                    tttCGCCTGATGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATg                                                                                                             <  1:1250950/140‑1 (MQ=255)
                    tttCGCCTGATGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCACTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATg                                                                                                             <  2:994452/140‑1 (MQ=255)
                       cGCCTGATGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTtg                                                                                                          <  1:559516/140‑1 (MQ=255)
                       cGCCTGATGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCACTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTtg                                                                                                          <  2:971761/140‑1 (MQ=255)
                         ccTGATGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTtggt                                                                                                        >  1:359165/1‑140 (MQ=255)
                            gATGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGa                                                                                                     <  2:472207/140‑1 (MQ=255)
                              tGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGata                                                                                                   >  1:1318409/1‑140 (MQ=255)
                                gCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATg                                                                                                 >  2:208844/1‑140 (MQ=255)
                                    gtgtCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATggcgg                                                                                             >  1:1285351/1‑140 (MQ=255)
                                       tCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGgcgc                                                                                          >  1:674360/1‑140 (MQ=255)
                                         cGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGt                                                                                        <  2:359165/140‑1 (MQ=255)
                                            cACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAg                                                                                     <  2:273182/140‑1 (MQ=255)
                                             aCTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAgg                                                                                    <  2:1285351/140‑1 (MQ=255)
                                             aCTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAgg                                                                                    <  2:1318409/140‑1 (MQ=255)
                                                      cgcCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAg                                                                           >  2:1225750/1‑140 (MQ=255)
                                                        ccATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGAc                                                                         <  2:757980/140‑1 (MQ=255)
                                                         cATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAgg                                                                                    >  1:1195886/1‑128 (MQ=255)
                                                         cATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAgg                                                                                    <  2:1195886/128‑1 (MQ=255)
                                                           tGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACaaa                                                                      >  1:102914/1‑140 (MQ=255)
                                                           tGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACaaa                                                                      >  1:984571/1‑140 (MQ=255)
                                                                     tgtgAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTcg                                                            >  1:156647/1‑140 (MQ=255)
                                                                       tgAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTcgcg                                                          <  1:1149033/140‑1 (MQ=255)
                                                                       tgAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTcgcg                                                          <  1:1225750/140‑1 (MQ=255)
                                                                            gTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGttttt                                                     <  1:1510865/140‑1 (MQ=255)
                                                                            gTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGttttt                                                     <  2:1226587/140‑1 (MQ=255)
                                                                            gTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGttttt                                                     <  1:743202/140‑1 (MQ=255)
                                                                            gTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGttttt                                                     <  2:156647/140‑1 (MQ=255)
                                                                             tGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTc                                                    >  1:582624/1‑140 (MQ=255)
                                                                              gCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCt                                                   <  2:102914/140‑1 (MQ=255)
                                                                              gCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCt                                                   <  2:984571/140‑1 (MQ=255)
                                                                                     tGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAg                                            <  1:1409886/140‑1 (MQ=255)
                                                                                      gggACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAACCAAAGTCGCGTTTTTCTACTCAAGc                                           <  2:23856/140‑1 (MQ=255)
                                                                                            ctGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCAcc                                     >  2:1399796/1‑140 (MQ=255)
                                                                                             tGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCt                                                   <  2:999468/125‑1 (MQ=255)
                                                                                             tGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCt                                                   >  1:999468/1‑125 (MQ=255)
                                                                                                tACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTa                                 <  2:826735/140‑1 (MQ=255)
                                                                                                 aCTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTAc                                <  2:785413/140‑1 (MQ=255)
                                                                                                 aCTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTAc                                <  2:582624/140‑1 (MQ=255)
                                                                                                 aCTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTAc                                <  1:982025/140‑1 (MQ=255)
                                                                                                     aaCCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGAc                            >  2:1232796/1‑140 (MQ=255)
                                                                                                     aaCCGGAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGAc                            >  2:29735/1‑140 (MQ=255)
                                                                                                         ggAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGACCaaa                        >  1:727188/1‑140 (MQ=255)
                                                                                                         ggAGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGACCaaa                        >  1:454927/1‑140 (MQ=255)
                                                                                                           aGTGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGACCAAAAc                      >  2:1245664/1‑140 (MQ=255)
                                                                                                             tGCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGACCAAAACCa                    <  1:1306665/140‑1 (MQ=255)
                                                                                                              gCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGACCAAAACCAg                   <  2:144053/140‑1 (MQ=255)
                                                                                                              gCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGACCAAAACCAg                   <  1:208844/140‑1 (MQ=255)
                                                                                                              gCCGCTCTTACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGACCAAAACCAg                   <  2:674360/140‑1 (MQ=255)
                                                                                                                     ttACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGACCAAAACCAGTggg               <  2:683317/137‑1 (MQ=255)
                                                                                                                     ttACTACATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGACCAAAACCAGTggg               >  1:683317/1‑137 (MQ=255)
                                                                                                                       actacATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGACCAAAACCa                    >  2:591435/1‑130 (MQ=255)
                                                                                                                       actacATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGACCAAAACCa                    <  1:591435/130‑1 (MQ=255)
                                                                                                                       actacATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGACCAAAACCAGTGGGGGaaa          >  2:1305966/1‑140 (MQ=255)
                                                                                                                           cATTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGACCAAAACCAGTGGGTGAaagaag      <  2:727188/140‑1 (MQ=255)
                                                                                                                            aTTAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGACCAAAACCAGTGGGTGAAAGaagc     >  1:421173/1‑140 (MQ=255)
                                                                                                                             ttAATCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGGTTTTCTACTCAAGCCCCACCGTTACGGACCAAAACCAGTGGGTGAAAGaagcg    >  2:1305577/1‑140 (MQ=255)
                                                                                                                               aaTCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGACCAAAACCAGTGGGTGAAAGaagcgaa  >  1:876962/1‑140 (MQ=255)
                                                                                                                                aTCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGACCAAAACCAGTGGGTGAAAGaagc     <  2:1510157/136‑1 (MQ=255)
                                                                                                                                aTCAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGACCAAAACCAGTGGGTGAAAGaagc     >  1:1510157/1‑136 (MQ=255)
                                                                                                                                  cAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGACCAAAACCAGTg                 <  2:484343/122‑1 (MQ=255)
                                                                                                                                  cAGGGAGCGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGACCAAAACCAGTg                 >  1:484343/1‑122 (MQ=255)
                                                                                                                                        |                                                                                                                                  
CGCCATTATCGTTTCTGCGGTTTCGCCTGATGGCTTGTGTCCGGCACTGAAACGCGCCATGCAACGTGGTGTGAGAGTGCTGACCTGGGACTCTGATACTAAACCGGAGTGCCGCTCTTACTACATTAATCAGGGAACGCCCGCCCAGTTAGGAGGTATGTTGGTGGATATGGCGGCGCGTCAGGTGAATAAAGACAAAGCCAAAGTCGCGTTTTTCTACTCAAGCCCCACCGTTACGGACCAAAACCAGTGGGTGAAAGAAGCGAA  >  NC_000913/1605308‑1605574

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A