Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F60 I1 R1 25 51.1 1725140 98.8% 1704438 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,237,248 Δ11 bp intergenic (‑7/‑313) ycgB ← / → dadA PF04293 family protein YcgB/D‑amino acid dehydrogenase

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1237248 1237258 11 39 [0] [0] 39 ycgB/dadA PF04293 family protein YcgB/D‑amino acid dehydrogenase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12372470 (0.000)39 (0.770) 32/276 0.5 100% intergenic (‑6/‑324) ycgB/dadA PF04293 family protein YcgB/D‑amino acid dehydrogenase
?NC_000913 1237259 = 0 (0.000)intergenic (‑18/‑312) ycgB/dadA PF04293 family protein YcgB/D‑amino acid dehydrogenase

GATK/CNVnator alignment

N/A