Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A22 F60 I1 R1 18 54.7 1860826 98.9% 1840356 138.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,982,300 A→G intergenic (+28/‑75) yifK → / → argX putative transporter YifK/tRNA‑Arg

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,982,3000AG100.0% 240.8 / NA 66intergenic (+28/‑75)yifK/argXputative transporter YifK/tRNA‑Arg
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (34/32);  total (34/32)

ATACGCGTATGTCGCTGTTTGTTGGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCG  >  NC_000913/3982163‑3982432
                                                                                                                                         |                                                                                                                                    
aTACGCGTATGTCGCTGTTTGTTGGCATCATCTTTATGCTGGCGGTGACGGCGGTTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGcg                                                                                                                                    >  2:398908/1‑140 (MQ=255)
aTACGCGTATGTCGCTGTTTGTTGGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGcg                                                                                                                                    >  2:570405/1‑140 (MQ=255)
                gtttgttGGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTaaaa                                                                                                                    <  1:609866/140‑1 (MQ=255)
                gtttgttGGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTaaaa                                                                                                                    <  1:503374/140‑1 (MQ=255)
                gtttgttGGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTaaaa                                                                                                                    <  2:503505/140‑1 (MQ=255)
                gtttgttGGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTaaaa                                                                                                                    >  2:503374/1‑140 (MQ=255)
                       ggCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGCTTTTTGCCTTAATCGCCACGGGAAAGCGCATAAACTGGGGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACt                                                                                                             >  2:539173/1‑140 (MQ=255)
                           tcatcTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGAc                                                                                                         >  1:59631/1‑140 (MQ=255)
                             atcTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAg                                                                                                                  <  2:409588/129‑1 (MQ=255)
                             atcTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAg                                                                                                                  >  1:409588/1‑129 (MQ=255)
                               cTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACagag                                                                                                     >  1:677950/1‑140 (MQ=255)
                                      cTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTggg                                                                                              <  2:677950/140‑1 (MQ=255)
                                        ggCGGTGACGGCGCTTTTTAAAGATTTTGGCCTTTATCGCCACGGGGAAGCGCATAAACTGGAGGAATATACAGCAAAACGCACAAACCGTAACCAAGCGCGCAAATTTTTTTAAAAGGGACTAGACAGAGGGGCGGGaa                                                                                            >  2:783241/1‑140 (MQ=255)
                                        ggCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGaa                                                                                            >  1:775860/1‑140 (MQ=255)
                                         gCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACt                                                                                                             >  2:173577/1‑122 (MQ=255)
                                         gCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACt                                                                                                             <  1:173577/122‑1 (MQ=255)
                                         gCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACaga                                                                                                      >  2:424401/1‑129 (MQ=255)
                                         gCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACaga                                                                                                      <  1:424401/129‑1 (MQ=255)
                                         gCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACa                                                                                                        <  2:168200/127‑1 (MQ=255)
                                         gCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACa                                                                                                        >  1:168200/1‑127 (MQ=255)
                                         gCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAg                                                                                           >  2:729696/1‑140 (MQ=255)
                                         gCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAg                                                                                           >  2:649012/1‑140 (MQ=255)
                                         gCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAg                                                                                           >  1:804930/1‑140 (MQ=255)
                                         gCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAg                                                                                           >  1:399233/1‑140 (MQ=255)
                                         gCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAg                                                                                           >  2:385077/1‑140 (MQ=255)
                                         gCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAg                                                                                           >  1:445197/1‑140 (MQ=255)
                                         gCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGGGGGAAg                                                                                           >  2:563344/1‑140 (MQ=255)
                                          cGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGt                                                                                          <  1:649012/140‑1 (MQ=255)
                                          cGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGt                                                                                          <  1:525233/140‑1 (MQ=255)
                                          cGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGt                                                                                          <  1:68584/140‑1 (MQ=255)
                                          cGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGt                                                                                          <  1:729696/140‑1 (MQ=255)
                                          cGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGt                                                                                          <  2:775860/140‑1 (MQ=255)
                                          cGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGt                                                                                          <  1:385077/140‑1 (MQ=255)
                                               aCGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGta                                                                                     <  2:314888/140‑1 (MQ=255)
                                                     aTTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATcc                                                                               >  1:232240/1‑140 (MQ=255)
                                                                 tttGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACg                                                                   >  2:435791/1‑140 (MQ=255)
                                                                 tttGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACg                                                                   >  1:825970/1‑140 (MQ=255)
                                                                  ttGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACgg                                                                  >  2:111944/1‑140 (MQ=255)
                                                                         tAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAg                                                           >  2:246031/1‑140 (MQ=255)
                                                                                  cGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAg                                                  <  1:35945/140‑1 (MQ=255)
                                                                                  cGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAg                                                  <  2:825970/140‑1 (MQ=255)
                                                                                    ggAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCt                                                <  1:111944/140‑1 (MQ=255)
                                                                                       aaGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAg                                             <  1:246031/140‑1 (MQ=255)
                                                                                       aaGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAg                                             <  2:232240/140‑1 (MQ=255)
                                                                                             aTAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAg                                                  <  2:20422/129‑1 (MQ=255)
                                                                                             aTAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAg                                                  >  1:20422/1‑129 (MQ=255)
                                                                                                   tGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAgcg                                 <  2:445197/140‑1 (MQ=255)
                                                                                                    ggaggaATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAgcgc                                >  2:406227/1‑140 (MQ=255)
                                                                                                    ggaggaATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAgcgc                                >  2:565298/1‑140 (MQ=255)
                                                                                                     gaggaATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAg                                             <  2:392474/126‑1 (MQ=255)
                                                                                                     gaggaATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAg                                             >  1:392474/1‑126 (MQ=255)
                                                                                                       ggaATAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGc                             >  1:552778/1‑140 (MQ=255)
                                                                                                           tAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAgca                                 >  1:179782/1‑131 (MQ=255)
                                                                                                           tAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAgca                                 <  2:704486/132‑2 (MQ=255)
                                                                                                           tAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAgca                                 >  1:704486/1‑131 (MQ=255)
                                                                                                           tAAGCAGCAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAgca                                 <  2:179782/132‑2 (MQ=255)
                                                                                                             agcagcAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCg                       >  2:272915/1‑140 (MQ=255)
                                                                                                             agcagcAAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCg                       <  2:59631/140‑1 (MQ=255)
                                                                                                                  caAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGc                             >  1:888004/1‑129 (MQ=255)
                                                                                                                  caAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGc                             <  2:888004/129‑1 (MQ=255)
                                                                                                                  caAAACGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGc                  >  1:919276/1‑140 (MQ=255)
                                                                                                                       cGCACAAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAgg             <  2:804930/140‑1 (MQ=255)
                                                                                                                          acaAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGtct          <  1:526969/140‑1 (MQ=255)
                                                                                                                          acaAACCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGtct          <  1:435791/140‑1 (MQ=255)
                                                                                                                            aaaCCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTcc                        >  2:516759/1‑124 (MQ=255)
                                                                                                                            aaaCCGTAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTcc                        <  1:516759/124‑1 (MQ=255)
                                                                                                                                  tAACCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCg  >  2:343274/1‑140 (MQ=255)
                                                                                                                                   aaCCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCa        <  1:897303/133‑1 (MQ=255)
                                                                                                                                   aaCCAAGCGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCa        >  2:897303/1‑133 (MQ=255)
                                                                                                                                         |                                                                                                                                    
ATACGCGTATGTCGCTGTTTGTTGGCATCATCTTTATGCTGGCGGTGACGGCGATTTATAAAGTTTTTGGCCTTAATCGCCACGGGAAAGCGCATAAACTGGAGGAATAAGCAGCAAAACGCACAAACCGTAACCAAACGCGCAATTTATTTAAAAAGGGACTAGACAGAGGGGTGGGAAGTCCGTATTATCCACCCCCGCAACGGCGCTAAGCGCCCGTAGCTCAGCTGGATAGAGCGCTGCCCTCCGGAGGCAGAGGTCTCAGGTTCG  >  NC_000913/3982163‑3982432

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A