Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A22 F60 I1 R1 18 54.7 1860826 98.9% 1840356 138.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,201,579 Δ23 bp coding (88‑110/426 nt) zraP ← zinc responsive, periplasmic protein with chaperone activity

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4201579 4201601 23 61 [0] [0] 60 zraP zinc responsive, periplasmic protein with chaperone activity

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 42015780 (0.000)58 (1.070) 39/272 0.3 100% coding (111/426 nt) zraP zinc responsive, periplasmic protein with chaperone activity
?NC_000913 4201602 = 0 (0.000)coding (87/426 nt) zraP zinc responsive, periplasmic protein with chaperone activity

GATK/CNVnator alignment

N/A