Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F60 I1 R1	19	88.7	3019690	98.6%	2977414	138.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,893,859	A→C	intergenic (+135/‑22)	yidZ → / → yieE	putative LysR‑type transcriptional regulator YidZ/putative phosphopantetheinyl transferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,893,859	0	A	C	100.0%	292.7 / NA	75	intergenic (+135/‑22)	yidZ/yieE	putative LysR‑type transcriptional regulator YidZ/putative phosphopantetheinyl transferase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (40/35); total (40/35)

TAACCGAATCGTATGAAACGCGACCCAATTTCACAATAAAATGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGACCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGAAACATTCCCCCTCATCGTCAAAGCCG  >  NC_000913/3893722‑3893993

tAACCGAATCGTATGAAACGCGACCCAATTTCACAATAAAATGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGccc                                                                                                                                      <  1:919166/140‑1 (MQ=255)

tAACCGAATCGTATGAAACGCGACCCAATTTCACAATAAAATGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGccc                                                                                                                                      >  2:865129/1‑140 (MQ=255)

  aCCGAATCGTATGAAACGCGACCCAATTTCACAATAAAATGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCAt                                                                                                                                    >  2:1491446/1‑140 (MQ=255)

  aCCGAATCGTATGAAACGCGACCCAATTTCACAATAAAATGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCAt                                                                                                                                    <  1:956964/140‑1 (MQ=255)

        tCGTATGAAACGCGACCCAATTTCACAATAAAATGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCa                                                                                                                              <  1:865129/140‑1 (MQ=255)

        tCGTATGAAACGCGACCCAATTTCACAATAAAATGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCa                                                                                                                              >  1:1181695/1‑140 (MQ=255)

         cGTATGAAACGCGACCCAATTTCACAATAAAATGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCAt                                                                                                                             >  2:891350/1‑140 (MQ=255)

          gTATGAAACGCGACCCAATTTCACAATAAAATGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATg                                                                                                                            <  2:1394730/140‑1 (MQ=255)

           tATGAAACGCGACCCAATTTCACAATAAAATGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATgg                                                                                                                           >  1:92575/1‑140 (MQ=255)

           tATGAAACGCGACCCAATTTCACAATAAAATGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATgg                                                                                                                           >  1:1238128/1‑140 (MQ=255)

           tATGAAACGCGACCCAATTTCACAATAAAATGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATgg                                                                                                                           >  2:683144/1‑140 (MQ=255)

           tATGAAACGCGACCCAATTTCACAATAAAATGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATgg                                                                                                                           >  2:523475/1‑140 (MQ=255)

             tGAAACGCGACCCAATTTCACAATAAAATGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAg                                                                                                                         >  1:1373220/1‑140 (MQ=255)

                  cgcgACCCAATTTCACAATAAAATGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGaaa                                                                                                                    <  1:683144/140‑1 (MQ=255)

                    cgACCCAATTTCACAATAAAATGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGaaaaa                                                                                                                  <  2:1373220/140‑1 (MQ=255)

                      aCCCAATTTCACAATAAAATGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATg                                                                                                                >  2:1383797/1‑140 (MQ=255)

                          aaTTTCACAATAAAATGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGa                                                                                                            <  2:878294/140‑1 (MQ=255)

                            tttCACAATAAAATGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACt                                                                                                          >  1:105120/1‑140 (MQ=255)

                                        aTGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGa                                                                                              <  1:1376829/140‑1 (MQ=255)

                                         tGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAg                                                                                             <  2:105120/140‑1 (MQ=255)

                                          gTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAgg                                                                                            >  1:1242101/1‑140 (MQ=255)

                                                   ttGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAAc                                                                                   >  1:1179626/1‑140 (MQ=255)

                                                     gTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCCTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACgg                                                                                 <  2:1179626/140‑1 (MQ=255)

                                                      taataaGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGa                                                                                <  1:1491446/140‑1 (MQ=255)

                                                          aaGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGa                                                                            <  1:962332/140‑1 (MQ=255)

                                                             cTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACAt                                                                         >  2:215279/1‑140 (MQ=255)

                                                                gTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGAtttt                                                                                      >  2:900509/1‑124 (MQ=255)

                                                                gTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGAtttt                                                                                      <  1:900509/124‑1 (MQ=255)

                                                                gTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTg                                                                      >  1:637033/1‑140 (MQ=255)

                                                                     aaTCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTc                                                                 <  1:1383797/140‑1 (MQ=255)

                                                                      aTCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCt                                                                >  1:1456967/1‑140 (MQ=255)

                                                                          aaCTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTc                                                            >  2:326208/1‑140 (MQ=255)

                                                                          aaCTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTc                                                            >  1:1184999/1‑140 (MQ=255)

                                                                             ttttAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGtc                                                         <  1:583049/140‑1 (MQ=255)

                                                                               ttAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGtctc                                                       <  2:591184/140‑1 (MQ=255)

                                                                               ttAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGtctc                                                       <  1:408097/140‑1 (MQ=255)

                                                                                     gCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTctcccctcc                                                 <  2:637033/140‑1 (MQ=255)

                                                                                       tttAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCa                                               <  2:1475931/140‑1 (MQ=255)

                                                                                       tttAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCa                                               >  1:1194003/1‑140 (MQ=255)

                                                                                       tttAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCa                                               >  1:1475931/1‑140 (MQ=255)

                                                                                       tttAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCa                                               <  1:215279/140‑1 (MQ=255)

                                                                                         tAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAgt                                             >  2:717862/1‑140 (MQ=255)

                                                                                         tAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAgt                                             <  2:1184999/140‑1 (MQ=255)

                                                                                           gTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAgtgt                                           <  1:891350/140‑1 (MQ=255)

                                                                                            tCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGtc                                          <  2:1456967/140‑1 (MQ=255)

                                                                                               gTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGtcatc                                       <  2:1423319/140‑1 (MQ=255)

                                                                                                tCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGtcatca                                      >  2:73895/1‑140 (MQ=255)

                                                                                                tCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGtcatca                                      >  2:1404822/1‑140 (MQ=255)

                                                                                                 ccATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTctcc                                                      <  2:752223/123‑1 (MQ=255)

                                                                                                 ccATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTctcc                                                      >  1:752223/1‑123 (MQ=255)

                                                                                                    tcatTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCaagaa                                  <  1:717862/140‑1 (MQ=255)

                                                                                                     catTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCaagaag                                 >  2:494569/1‑140 (MQ=255)

                                                                                                     catTCCAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCaagaag                                 >  2:1033375/1‑140 (MQ=255)

                                                                                                          cAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGa                            >  2:1355402/1‑140 (MQ=255)

                                                                                                          cAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGa                            >  1:1257718/1‑140 (MQ=255)

                                                                                                          cAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGa                            <  2:887533/140‑1 (MQ=255)

                                                                                                          cAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGa                            >  2:353348/1‑140 (MQ=255)

                                                                                                          cAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGa                            >  2:415097/1‑140 (MQ=255)

                                                                                                          cAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGa                            <  2:850012/140‑1 (MQ=255)

                                                                                                          cAGTAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGa                            >  2:53877/1‑140 (MQ=255)

                                                                                                             tAAATGATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGAAAc                         >  2:330589/1‑140 (MQ=255)

                                                                                                                  gATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGAAACATTcc                    <  2:1181695/140‑1 (MQ=255)

                                                                                                                  gATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGAAACATTcc                    <  1:326208/140‑1 (MQ=255)

                                                                                                                  gATTACTCTTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGAAACATTcc                    <  1:523475/140‑1 (MQ=255)

                                                                                                                  gATTACTCTTGTACTCATACTGACCCATTAAGCATGGAGCGAAAACTGGCGACGCACTTTGCCCGAGGGATTTTAACGGAGCGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGAAACATTcc                    >  2:737176/1‑140 (MQ=255)

                                                                                                                       ctctTGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGAAACATTCCCCCTc               >  2:956265/1‑140 (MQ=255)

                                                                                                                          ttGTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGAAACATTCCCCCTCATc            >  1:504016/1‑140 (MQ=255)

                                                                                                                            gTATTCATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGAAACATTCCCCCTCATCGt          >  1:1308278/1‑140 (MQ=255)

                                                                                                                            gTATTCATAAGGGCCCATTAAGCATGGAGCGAAAAATGGCGACACGCTTTGCCCCAGGGAATTTTACGGAAGGACATCTGGTTTCTGTTCGTCTCCCCTCCCAGTGTCATCAATAAGCCCGAAACATTCCCCCTCATCGt          <  2:1451122/140‑1 (MQ=255)

                                                                                                                                 cATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGAAACATTCCCCCTCATCGTCAAAg     <  1:73895/140‑1 (MQ=255)

                                                                                                                                 cATAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGAAACATTCCCCCTCATCGTCAAAg     <  1:1404822/140‑1 (MQ=255)

                                                                                                                                  aTAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGAAACATTCCCCCTCATCGTCaa       >  1:142314/1‑137 (MQ=255)

                                                                                                                                  aTAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGAAACATTCCCCCTCATCGTCaa       <  2:142314/137‑1 (MQ=255)

                                                                                                                                   tAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGAAACATTCCCCCTCATCGTCAAAGcc   <  1:494569/140‑1 (MQ=255)

                                                                                                                                   tAATGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGAAACATTCCCCCTCATCGTCAAAGcc   <  1:353348/140‑1 (MQ=255)

                                                                                                                                    aaTGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGAAACATTCCCCCTCATCGTCAAAGCCg  >  1:1008747/1‑140 (MQ=255)

                                                                                                                                    aaTGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGAAACATTCCCCCTCATCGTCAAAGCCg  >  1:1410625/1‑140 (MQ=255)

                                                                                                                                    aaTGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGAAACATTCCCCCTCATCGTCAAAGCCg  >  2:245221/1‑140 (MQ=255)

                                                                                                                                    aaTGGCCCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGAAACATTCCCCCTCATCGTCAAAGCCg  >  2:1237646/1‑140 (MQ=255)

TAACCGAATCGTATGAAACGCGACCCAATTTCACAATAAAATGTAAAAAAGTTGTAATAAGCTTGTCTGAATCGAACTTTTAGCCGCTTTAGTCTGTCCATCATTCCAGTAAATGATTACTCTTGTATTCATAATGGACCATTAAGCATGGAGCGAAAAATGGCGACTCACTTTGCCCGAGGGATTTTAACGGAAGGACATCTGATTTCTGTTCGTCTCCCCTCCCAGTGTCATCAAGAAGCCCGAAACATTCCCCCTCATCGTCAAAGCCG  >  NC_000913/3893722‑3893993

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A