Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A43 F60 I1 R1	18	110.5	3780228	98.7%	3731085	138.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,899,276	G→C	P40A (CCC→GCC)	yieK ←	putative glucosamine‑6‑phosphate deaminase YieK

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,899,276	0	G	C	100.0%	403.0 / NA	103	P40A (CCC→GCC)	yieK	putative glucosamine‑6‑phosphate deaminase YieK
Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (53/50); total (53/50)

Only 100 of 103 total aligned reads displayed.

CGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAATTTCATCTTAATGCCTTATTTTATT  >  NC_000913/3899143‑3899412

cGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCt                                                                                                                                    >  2:955489/1‑140 (MQ=255)

   aGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCC‑TTGGCCGTGCTACcg                                                                                                                                <  1:1145735/140‑1 (MQ=255)

     aTTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACcgg                                                                                                                               >  1:539413/1‑140 (MQ=255)

     aTTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACcgg                                                                                                                               <  2:1076823/140‑1 (MQ=255)

     aTTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACcgg                                                                                                                               <  2:4016/140‑1 (MQ=255)

      ttGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACcggc                                                                                                                              >  2:1118498/1‑140 (MQ=255)

          tAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTa                                                                                                                          >  2:1004631/1‑140 (MQ=255)

               gTTACGCTTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAAttta                                                                                                                     >  2:255848/1‑138 (MQ=255)

               gTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTg                                                                                                                      <  2:1584298/139‑1 (MQ=255)

               gTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTg                                                                                                                      >  1:1584298/1‑139 (MQ=255)

               gTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGc                                                                                                                     >  1:1504201/1‑140 (MQ=255)

               gTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGc                                                                                                                     <  2:1118638/140‑1 (MQ=255)

               gTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGc                                                                                                                     <  1:1835073/140‑1 (MQ=255)

               gTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGc                                                                                                                     <  2:1701839/140‑1 (MQ=255)

               gTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGc                                                                                                                     <  2:195548/140‑1 (MQ=255)

               gTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGc                                                                                                                     <  2:214984/140‑1 (MQ=255)

               gTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGc                                                                                                                     <  1:955489/140‑1 (MQ=255)

               gTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGc                                                                                                                     <  2:539413/140‑1 (MQ=255)

               gTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGc                                                                                                                     <  1:91231/140‑1 (MQ=255)

                   cGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAgg                                                                                                                 >  1:1696487/1‑140 (MQ=255)

                   cGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAgg                                                                                                                 <  1:1156743/140‑1 (MQ=255)

                   cGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAgg                                                                                                                 >  2:1223373/1‑140 (MQ=255)

                   cGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAgg                                                                                                                 >  1:1328407/1‑140 (MQ=255)

                   cGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAgg                                                                                                                 >  2:858772/1‑140 (MQ=255)

                        tctcCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTGAATGCCAGGtttaa                                                                                                            >  2:1377672/1‑137 (MQ=255)

                        tctcCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGc                                                                                                                     <  2:738472/131‑1 (MQ=255)

                        tctcCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGc                                                                                                                     >  1:738472/1‑131 (MQ=255)

                        tctcCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAac                                                                                                            >  2:1252487/1‑140 (MQ=255)

                         ctcCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAaca                                                                                                           >  1:357722/1‑140 (MQ=255)

                             ctctTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACacgac                                                                                                       >  1:230913/1‑140 (MQ=255)

                                 ttGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGt                                                                                                   <  1:1862392/140‑1 (MQ=255)

                                  tGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTTCCAGGGTAACACGACCCGTc                                                                                                  >  2:869536/1‑140 (MQ=255)

                                  tGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTc                                                                                                  >  1:133182/1‑140 (MQ=255)

                                  tGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTc                                                                                                  >  2:705995/1‑140 (MQ=255)

                                   gCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGGCCGGTTAACAAGACCCGTCt                                                                                                 >  2:528388/1‑140 (MQ=255)

                                    ccGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCtt                                                                                                <  1:1118498/140‑1 (MQ=255)

                                    ccGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCtt                                                                                                <  1:1377672/140‑1 (MQ=255)

                                    ccGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCtt                                                                                                >  1:49479/1‑140 (MQ=255)

                                    ccGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCtt                                                                                                <  1:1252487/140‑1 (MQ=255)

                                    ccGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCtt                                                                                                <  1:231888/140‑1 (MQ=255)

                                      gcgAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCg                                                                                              >  1:947347/1‑140 (MQ=255)

                                       cgAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGa                                                                                             >  1:320649/1‑140 (MQ=255)

                                         aaaTGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACa                                                                                           <  1:1620508/140‑1 (MQ=255)

                                         aaaTGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACa                                                                                           <  2:1504201/140‑1 (MQ=255)

                                           aTGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACata                                                                                         <  2:357722/140‑1 (MQ=255)

                                               aaTTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAAc                                                                                     <  2:320649/140‑1 (MQ=255)

                                               aaTTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAAc                                                                                     <  1:1004631/140‑1 (MQ=255)

                                                 tttCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCa                                                                                   <  1:858772/140‑1 (MQ=255)

                                                      tcaAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCtt                                                                                                <  1:980611/122‑1 (MQ=255)

                                                              ataGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGtgtg                                                                      <  2:133182/140‑1 (MQ=255)

                                                                      aGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGaca                                                              <  1:1223373/140‑1 (MQ=255)

                                                                      aGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGaca                                                              >  2:1490072/1‑140 (MQ=255)

                                                                      aGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGaca                                                              <  1:705995/140‑1 (MQ=255)

                                                                        cAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACg                                                            <  1:625553/140‑1 (MQ=255)

                                                                            tATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTc                                                        >  1:707250/1‑140 (MQ=255)

                                                                            tATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTc                                                        >  2:1503108/1‑140 (MQ=255)

                                                                             aTCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCa                                                       <  2:213771/140‑1 (MQ=255)

                                                                             aTCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACCACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCa                                                       >  2:824489/1‑140 (MQ=255)

                                                                               cGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCAtt                                                     <  2:1328407/140‑1 (MQ=255)

                                                                                       ggCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTa                                             <  1:1823424/140‑1 (MQ=255)

                                                                                       ggCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTa                                             <  2:230913/140‑1 (MQ=255)

                                                                                       ggCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTa                                             <  2:1558833/140‑1 (MQ=255)

                                                                                         cTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAAt                                           >  2:139780/1‑140 (MQ=255)

                                                                                         cTTACCTTTAACCAGGGCGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAAGTTGCGGGGTAAAACCACCCGTGTTTGGCATATAATCAAGCAGGAGGGGTGCCGCCAAACGGCCCCTTTTCCGGTaaa                                           >  2:1878959/1‑139 (MQ=255)

                                                                                            aCCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCt                                                         <  2:189830/123‑1 (MQ=255)

                                                                                            aCCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCt                                                         >  1:189830/1‑123 (MQ=255)

                                                                                            aCCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCAttt                                                    <  2:1503962/128‑1 (MQ=255)

                                                                                            aCCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCAttt                                                    >  1:1503962/1‑128 (MQ=255)

                                                                                            aCCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCtt                                        <  1:1503108/140‑1 (MQ=255)

                                                                                            aCCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCCTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGGCACGGCTCATTTTCTGGTAATCtt                                        >  2:886842/1‑140 (MQ=255)

                                                                                                ttAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGt                                    <  1:948672/140‑1 (MQ=255)

                                                                                                ttAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGt                                    <  1:139780/140‑1 (MQ=255)

                                                                                                 tAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGGGTGCCGCGACACGGCCCATTTCCTGGGAATCTTCGGTa                                   >  2:1159326/1‑140 (MQ=255)

                                                                                                     cAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGa                               <  1:116475/140‑1 (MQ=255)

                                                                                                     cAGGGTGGTGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGa                               <  1:947957/140‑1 (MQ=255)

                                                                                                        ggtggtGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTa                            >  1:314298/1‑140 (MQ=255)

                                                                                                        ggtggtGAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTa                            >  2:571541/1‑140 (MQ=255)

                                                                                                          tggtgAGGTATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAAt                          <  1:1490072/140‑1 (MQ=255)

                                                                                                                  tATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTTGTAATCTTCGGTAATGATTAATTTCATCtt                  >  1:1309030/1‑140 (MQ=255)

                                                                                                                  tATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAATTTCATCtt                  <  2:947347/140‑1 (MQ=255)

                                                                                                                  tATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAATTTCATCtt                  >  1:578933/1‑140 (MQ=255)

                                                                                                                  tATTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGGTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAATTTCATCtt                  >  1:1704644/1‑140 (MQ=255)

                                                                                                                   aTTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTTCCAGGGTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAATTTCATCTTa                 >  2:595835/1‑140 (MQ=255)

                                                                                                                   aTTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAATTTCATCTTa                 <  2:314298/140‑1 (MQ=255)

                                                                                                                   aTTCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAATTTCATCTTa                 <  2:49479/140‑1 (MQ=255)

                                                                                                                    ttCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAATTTCATCTTa                 >  1:400858/1‑139 (MQ=255)

                                                                                                                    ttCATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAATTTCATCTTa                 <  2:400858/139‑1 (MQ=255)

                                                                                                                      cATACATGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAATTTCATCTTAATg              <  2:1704644/140‑1 (MQ=255)

                                                                                                                           aTGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAATTTCATCTTAATGCCtta         >  1:1452801/1‑140 (MQ=255)

                                                                                                                           aTGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAATTTCATCTTAATGCCtta         >  2:959882/1‑140 (MQ=255)

                                                                                                                            tGCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAATTTCATCTTAATGCCtatt        >  2:1457834/1‑137 (MQ=255)

                                                                                                                             gCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGGGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGGAATGATTAATTTCATCTTAATGCCttatt       >  2:377445/1‑140 (MQ=255)

                                                                                                                             gCCTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAAACAAGCAGATGGTGTGCCGCGACACGGCTCATTTTCTGGTAATCTTCGGGAATGATTAATTTTATCTTTATGCCttatt       >  2:813313/1‑140 (MQ=255)

                                                                                                                              ccTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCTACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAATTTCATCTTAATGCCttattt      >  1:1557340/1‑140 (MQ=255)

                                                                                                                              ccTTTGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGGGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAATTTCATCTTAATGCCttattt      >  1:1585828/1‑140 (MQ=255)

                                                                                                                              ccTTTGGCCGTGCTACCGGCGGTAATTGCCAGGGTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAATTTTATCTTAATGCCttattt      >  1:202254/1‑140 (MQ=255)

                                                                                                                                tttGGCCGTGCTACCGGCGGTAATTGCCCGGGTAACACCACGCGTCTTCGGAATATAACCAAACAAATGGTGTGCCGCCACACCGGTCCTTTCCTGGGAATCTTCGGGAATGATTAATTTCATCTTAATGCCttattttt    >  2:333339/1‑139 (MQ=255)

                                                                                                                                tttGGCCGTGCTACCGGCGGTAATTGCCAGGGTAAAACGACCCGTCTTCGACATATAAACAAGCAGATGGTGTGCCGCGACACCGCTCCTTTCCTTGGAATCTTCGGTAATGATTAATTTCATCTTAATGCCttattttt    >  2:1798777/1‑139 (MQ=255)

                                                                                                                                 ttGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGGAATGATTAATTTCATCTTAATGCCttattttat   >  2:236371/1‑140 (MQ=255)

                                                                                                                                  tGGCCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAATTTCATCTTAATGCCttattttatt  <  2:1653844/140‑1 (MQ=255)

CGCAGATTGGTAATCGTTACGCCTTCTCCCTCTTTGCCGCGAAATGGAATTTCATCAAAATTATAGAAATAGCAGTTATCGTACCAGGGCTTACCTTTAACCAGGGTGGTGAGGTATTCATACATGCCTTTGGGCGTGCTACCGGCGGTAATTGCCAGGTTAACACGACGCGTCTTCGACATATAACCAAGCAGATGGTGTGCCGCGACACGGCTCATTTCCTGGTAATCTTCGGTAATGATTAATTTCATCTTAATGCCTTATTTTATT  >  NC_000913/3899143‑3899412

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A