Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A30 F60 I1 R1	15	91.2	3103664	98.7%	3063316	137.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,368,374	A→T	D99V (GAT→GTT)	pspA →	phage shock protein A

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,368,374	0	A	T	100.0%	239.1 / NA	69	D99V (GAT→GTT)	pspA	phage shock protein A
Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (30/39); total (30/39)

AAGAAACAGCTGACTCGCCGTATTGAACAAGCGTCGGCGCGTGAGGTTGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGATCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACACGCGCTCGCCAGCAGGCATTGATGTTA  >  NC_000913/1368238‑1368501

aagaaaCAGCTGACTCGCCGTATTGAACAAGCGTCGGCGCGTGAGGTTGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCt                                                                                                                              <  2:941328/140‑1 (MQ=255)

    aaCAGCTGACTCGCCGTATTGAACAAGCGTCGGCGCGTGAGGTTGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGAtt                                                                                                                          <  2:455125/140‑1 (MQ=255)

    aaCAGCTGACTCGCCGTATTGAACAAGCGTCGGCGCGTGAGGTTGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGAtt                                                                                                                          <  2:1421334/140‑1 (MQ=255)

      cAGCTGACTCGCCGTATTGAACAAGCGTCGGCGCGTGAGGTTGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCATTCTGATTaa                                                                                                                        <  1:836470/140‑1 (MQ=255)

          tGACTCGCCGTATTGAACAAGCGTCGGCGCGTGAGGTTGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTcc                                                                                                                    <  1:1253981/140‑1 (MQ=255)

            aCTCGCCGTATTGAACAAGCGTCGGCGCGTGAGGTTGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCt                                                                                                                  >  1:539193/1‑140 (MQ=255)

                 aggTATTGAACAAGCGTCGGCGCGTGAGGTTGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAAc                                                                                                             >  2:1272849/3‑140 (MQ=255)

                       tGAACAAGCGTCGGCGCGTGAGGTTGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAg                                                                                                       <  2:359809/140‑1 (MQ=255)

                          aCAAGCGTCGGCGCGTGAGGTTGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGa                                                                                                    <  2:897953/140‑1 (MQ=255)

                          aCAAGCGTCGGCGCGTGAGGTTGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGa                                                                                                    <  2:417595/140‑1 (MQ=255)

                          aCAAGCGTCGGCGCGTGAGGTTGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGa                                                                                                    <  1:593309/140‑1 (MQ=255)

                           cAAGCGTCGGCGCGTGAGGTTGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCt                                                                                                                  >  1:1039223/1‑125 (MQ=255)

                           cAAGCGTCGGCGCGTGAGGTTGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCt                                                                                                                  <  2:1039223/125‑1 (MQ=255)

                            aaGCGTCGGCGCGTGAGGTTGAATGGCAGGAAAAAACCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACg                                                                                                  <  2:798137/140‑1 (MQ=255)

                              gCGTCGGCGCGTGAGGTTGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCt                                                                                                >  1:391858/1‑140 (MQ=255)

                              gCGTCGGCGCGTGAGGTTGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCt                                                                                                >  2:322263/1‑140 (MQ=255)

                              gCGTCGGCGCGTGAGGTTGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCt                                                                                                >  2:300121/1‑140 (MQ=255)

                                  cGGCGCGTGAGGTTGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCtggtg                                                                                            <  1:322263/140‑1 (MQ=255)

                                   ggCGCGTGAGGTTGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCtggtgg                                                                                           >  1:1348328/1‑140 (MQ=255)

                                    gcgcGTGAGGTTGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGa                                                                                          <  1:58280/140‑1 (MQ=255)

                                               tGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTgg                                                                               <  1:1272849/140‑1 (MQ=255)

                                               tGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTgg                                                                               <  2:536067/140‑1 (MQ=255)

                                                 aaTGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCa                                                                             >  2:1543324/1‑140 (MQ=255)

                                                 aaTGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCa                                                                             >  2:19459/1‑140 (MQ=255)

                                                   tGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACg                                                                           <  1:640601/140‑1 (MQ=255)

                                                     gCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCa                                                                         <  2:1348328/140‑1 (MQ=255)

                                                     gCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCa                                                                         <  1:503822/140‑1 (MQ=255)

                                                      cAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCAt                                                                        <  2:539193/140‑1 (MQ=255)

                                                       aGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATg                                                                       <  2:837086/140‑1 (MQ=255)

                                                          aaaaaGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATgaag                                                                    <  2:646453/140‑1 (MQ=255)

                                                          aaaaaGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATgaag                                                                    <  2:1467535/140‑1 (MQ=255)

                                                           aaaaGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACg                                                                                   <  2:222226/124‑1 (MQ=255)

                                                           aaaaGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACg                                                                                   >  1:222226/1‑124 (MQ=255)

                                                                    aCTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACg                                                                           >  2:794378/1‑123 (MQ=255)

                                                                    aCTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACg                                                                           <  1:794378/123‑1 (MQ=255)

                                                                    aCTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTg                                                          >  1:316602/1‑140 (MQ=255)

                                                                           ctgctgAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCt                                                   <  1:570997/140‑1 (MQ=255)

                                                                             gctgAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTgg                                                 <  2:391858/140‑1 (MQ=255)

                                                                                        gagagGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAAt                                        <  2:772046/138‑1 (MQ=255)

                                                                                        gagagGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAAt                                        >  1:772046/1‑138 (MQ=255)

                                                                                        gagagGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTg                                      >  1:547315/1‑140 (MQ=255)

                                                                                        gagagGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTg                                      >  2:480478/1‑140 (MQ=255)

                                                                                         agagGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGa                                     >  1:1056109/1‑140 (MQ=255)

                                                                                           agGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGc                                   >  2:877432/1‑140 (MQ=255)

                                                                                             gATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGa                                 >  2:521095/1‑140 (MQ=255)

                                                                                                cTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAac                              >  2:1127404/1‑140 (MQ=255)

                                                                                                cTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAac                              >  1:982892/1‑140 (MQ=255)

                                                                                                   gCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGTCGAGCTGGAAAACAAATTGAGCGAAACAcg                           >  1:879665/1‑140 (MQ=255)

                                                                                                    cACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACAcgc                          >  1:508156/1‑140 (MQ=255)

                                                                                                     aCGTGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACAcgcg                         <  2:508156/140‑1 (MQ=255)

                                                                                                        tGCAGCGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACACGCGCTc                      >  2:1062782/1‑140 (MQ=255)

                                                                                                             cGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACACGCGCTCGCcag                 >  2:781202/1‑140 (MQ=255)

                                                                                                             cGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACACGCGCTCGCcag                 >  1:293820/1‑140 (MQ=255)

                                                                                                             cGTTAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACACGCGCTCGCcag                 >  1:115734/1‑140 (MQ=255)

                                                                                                             cGTTAATTCAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACACGCGCTCGCcag                 >  2:1266983/1‑140 (MQ=255)

                                                                                                               ttAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACACGCGCTCGCcagca               <  1:1288976/140‑1 (MQ=255)

                                                                                                               ttAATTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACACGCGCTCGCcagca               <  1:19459/140‑1 (MQ=255)

                                                                                                                 aaTTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACACGCGCTCGCCAGCAgg             <  2:1056109/140‑1 (MQ=255)

                                                                                                                  aTTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACACGCGCTCGCcagc                >  2:1443869/1‑136 (MQ=255)

                                                                                                                  aTTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACACGCGCTCGCcagc                <  1:1443869/136‑1 (MQ=255)

                                                                                                                  aTTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACACGCGCTCGCCAGCAGGc            >  2:25560/1‑140 (MQ=255)

                                                                                                                  aTTGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACACGCGCTCGCCAGCAGGc            >  2:103741/1‑140 (MQ=255)

                                                                                                                   ttGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACACGCGCTCGCCAGCAGGCa           <  2:115734/140‑1 (MQ=255)

                                                                                                                    tGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACACGCGCTCGCCAGCAGGCAt          <  1:300121/140‑1 (MQ=255)

                                                                                                                    tGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACACGCGCTCGCCAGCAGGCAt          <  1:1127404/140‑1 (MQ=255)

                                                                                                                    tGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACACGCGCTCGCCAGCAGGCAt          <  1:877432/140‑1 (MQ=255)

                                                                                                                    tGAAAAACAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACACGCGCTCGCCAGCAGGCAt          <  1:25560/140‑1 (MQ=255)

                                                                                                                       aaaaCAGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACACGCGCTCGCCAGCAGGCATTGa       <  2:547315/140‑1 (MQ=255)

                                                                                                                            aGAAACTGACCGTTCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACACGCGCTCGCCAGCAGGCATTGATGTTa  <  1:103741/140‑1 (MQ=255)

AAGAAACAGCTGACTCGCCGTATTGAACAAGCGTCGGCGCGTGAGGTTGAATGGCAGGAAAAAGCCGAACTGGCGCTGCTGAAAGAGAGAGAGGATCTGGCACGTGCAGCGTTAATTGAAAAACAGAAACTGACCGATCTGATTAAGTCCCTGGAACATGAAGTGACGCTGGTGGACGATACGCTGGCACGCATGAAGAAAGAGATTGGCGAGCTGGAAAACAAATTGAGCGAAACACGCGCTCGCCAGCAGGCATTGATGTTA  >  NC_000913/1368238‑1368501

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A