Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A31 F60 I1 R1	19	77.8	2638074	98.7%	2603779	138.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,121,566	G→C	Q348E (CAA→GAA)	pyrC ←	dihydroorotase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,121,566	0	G	C	100.0%	314.6 / NA	80	Q348E (CAA→GAA)	pyrC	dihydroorotase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (48/32); total (48/32)

CAATAGCCCCAGCTGGCAATGGAGAAGTTTTCGCTATGGTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTGTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGTTGACCGGCAACCCAT  >  NC_000913/1121433‑1121697

cAATAGCCCCAGCTGGCAATGGAGAAGTTTTCGCTATGGTGACTTCAATTCGCATAATAG‑CCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACg                                                                                                                              >  1:1002231/1‑140 (MQ=255)

 aaTAGCCCCAGCTGGCAATGGAGAAGTTTTCGCTATGGTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACg                                                                                                                              <  1:822564/140‑1 (MQ=255)

     gCCCCAGCTGGCAATGGAGAAGTTTTCGCTATGGTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGAcc                                                                                                                          <  1:1003591/140‑1 (MQ=255)

     gCCCCAGCTGGCAATGGAGAAGTTTTCGCTATGGTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGAcc                                                                                                                          <  1:1192444/140‑1 (MQ=255)

               gCAATGGAGAAGTTTTCGCTATGGTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGAc                                                                                                                           <  1:649124/129‑1 (MQ=255)

               gCAATGGAGAAGTTTTCGCTATGGTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGAc                                                                                                                           >  2:649124/1‑129 (MQ=255)

                cAATGGAGAAGTTTTCGCTATGGTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGAc                                                                                                                           <  1:1020750/128‑1 (MQ=255)

                cAATGGAGAAGTTTTCGCTATGGTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGAc                                                                                                                           >  2:1020750/1‑128 (MQ=255)

                cAATGGAGAAGTTTTCGCTATGGTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGtt                                                                                                               >  2:925216/1‑140 (MQ=255)

                         aGTTTTCGCTATGGTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCg                                                                                                      <  2:132528/140‑1 (MQ=255)

                                  tATGGTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGc                                                                                             >  2:818857/1‑140 (MQ=255)

                                     ggTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAgg                                                                                                   <  1:1138636/131‑1 (MQ=255)

                                     ggTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAgg                                                                                                   >  2:1138636/1‑131 (MQ=255)

                                       tGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAg                                                                                        <  1:925216/140‑1 (MQ=255)

                                          cTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGCCCAGCGTACCGTTTCCCCGGCg                                                                                                      <  2:219630/123‑1 (MQ=255)

                                          cTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGCTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCg                                                                                                      >  1:219630/1‑123 (MQ=255)

                                             cAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGtc                                                                                  <  1:491361/140‑1 (MQ=255)

                                                          aGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCg                                                                     <  1:980920/140‑1 (MQ=255)

                                                            cccccTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGAt                                                                   >  2:1245870/1‑140 (MQ=255)

                                                              cccTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGc                                                                 <  1:699236/140‑1 (MQ=255)

                                                               ccTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCt                                                                >  2:808834/1‑140 (MQ=255)

                                                                 tGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCttt                                                              >  2:1004995/1‑140 (MQ=255)

                                                                         ataCTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAAcc                                                      <  1:808834/140‑1 (MQ=255)

                                                                           aCTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTg                                                    >  1:525213/1‑140 (MQ=255)

                                                                            cTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGt                                                   <  1:1245870/140‑1 (MQ=255)

                                                                             tGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGtt                                                  >  2:941888/1‑140 (MQ=255)

                                                                             tGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGtt                                                  >  1:223559/1‑140 (MQ=255)

                                                                             tGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGtt                                                  >  1:1005349/1‑140 (MQ=255)

                                                                               gTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGc                                                >  2:987696/1‑140 (MQ=255)

                                                                               gTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGc                                                >  2:161950/1‑140 (MQ=255)

                                                                                  atttatACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAAc                                                       >  2:471417/1‑130 (MQ=255)

                                                                                  atttatACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAAc                                                       <  1:471417/130‑1 (MQ=255)

                                                                                     tataCAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAg                                                           >  1:579082/1‑123 (MQ=255)

                                                                                     tataCAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAg                                                           <  2:579082/123‑1 (MQ=255)

                                                                                       taCAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGAGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACg                                        >  2:270346/1‑140 (MQ=255)

                                                                                         cAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGTAACCTGTTGCTCTTCACGTa                                      >  2:279280/1‑140 (MQ=255)

                                                                                            gTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCa                                   >  2:833597/1‑140 (MQ=255)

                                                                                            gTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGC‑‑‑‑AATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTc                               >  2:451300/1‑140 (MQ=255)

                                                                                                aaTAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTc                               >  2:753846/1‑140 (MQ=255)

                                                                                                aaTAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTc                               <  2:1002231/140‑1 (MQ=255)

                                                                                                 aTAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCg                              >  1:956833/1‑140 (MQ=255)

                                                                                                  tAACCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGa                             <  1:833597/140‑1 (MQ=255)

                                                                                                    aCCTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATg                           >  1:927341/1‑140 (MQ=255)

                                                                                                      cTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGaa                         >  1:753228/1‑140 (MQ=255)

                                                                                                      cTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGaa                         >  1:292322/1‑140 (MQ=255)

                                                                                                      cTAATGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGaa                         >  1:284690/1‑140 (MQ=255)

                                                                                                          tGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAg                                  >  2:148789/1‑127 (MQ=255)

                                                                                                          tGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAg                                  <  1:148789/127‑1 (MQ=255)

                                                                                                          tGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGAt                            >  1:1231759/1‑133 (MQ=255)

                                                                                                          tGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGAt                            <  2:1231759/133‑1 (MQ=255)

                                                                                                          tGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAAtgtg                     >  1:154398/1‑140 (MQ=255)

                                                                                                          tGACAACAGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAAtgtg                     >  2:784934/1‑140 (MQ=255)

                                                                                                              aacaGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGt                 >  1:121497/1‑140 (MQ=255)

                                                                                                              aacaGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGt                 <  1:818857/140‑1 (MQ=255)

                                                                                                               acaGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGtt                >  1:1151836/1‑140 (MQ=255)

                                                                                                               acaGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGtt                >  1:570446/1‑140 (MQ=255)

                                                                                                               acaGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGtt                >  1:410021/1‑140 (MQ=255)

                                                                                                                caGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGTTg               >  2:79898/1‑140 (MQ=255)

                                                                                                                caGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGTTg               >  1:508919/1‑140 (MQ=255)

                                                                                                                caGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGTTg               >  1:903303/1‑140 (MQ=255)

                                                                                                                caGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGTTg               >  2:549165/1‑140 (MQ=255)

                                                                                                                caGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGTTg               >  1:139531/1‑140 (MQ=255)

                                                                                                                caGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCAGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGTTg               >  1:204676/1‑140 (MQ=255)

                                                                                                                 aGGAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGC‑‑‑‑AATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGTTGACCgg          <  1:451300/140‑1 (MQ=255)

                                                                                                                   gAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAAt                        >  2:906082/1‑128 (MQ=255)

                                                                                                                   gAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAAt                        <  1:906082/128‑1 (MQ=255)

                                                                                                                   gAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGtt                >  1:13047/1‑136 (MQ=255)

                                                                                                                   gAAGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGtt                <  2:13047/136‑1 (MQ=255)

                                                                                                                    aaGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGTTGACCg           <  2:223559/140‑1 (MQ=255)

                                                                                                                     aGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGTTGACCgg          >  2:855843/1‑140 (MQ=255)

                                                                                                                     aGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGTTGACCgg          <  2:121497/140‑1 (MQ=255)

                                                                                                                     aGCTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGTTGACCgg          <  2:154398/140‑1 (MQ=255)

                                                                                                                       cTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGTTGACCGGCa        <  2:903303/140‑1 (MQ=255)

                                                                                                                       cTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGTTGACCGGCa        <  2:139531/140‑1 (MQ=255)

                                                                                                                       cTACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGTTGACCGGCa        <  2:1151836/140‑1 (MQ=255)

                                                                                                                        tACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGTTGACCGGCaa       >  1:998540/1‑140 (MQ=255)

                                                                                                                        tACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGTTGACCGGCa        >  1:871042/1‑139 (MQ=255)

                                                                                                                        tACGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGTTGACCGGCa        <  2:871042/139‑1 (MQ=255)

                                                                                                                         aCGATTTTTATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGTTGACCGGCAAc      <  1:1004995/140‑1 (MQ=255)

                                                                                                                             tttttATTCTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGTTGACCGGCAACCCAt  >  2:1168842/1‑140 (MQ=255)

CAATAGCCCCAGCTGGCAATGGAGAAGTTTTCGCTATGGTGACTTCAATTCGCATAATAGCCCCCTGTTGAATATACTGGTTATTTATACAGGTAAAATAACCTAATGACAACAGGAAGCTACGATTTTTATTGTTTAACGGACCAGCGTACCGTTTCCCCGGCGAGGAATGGCACCAGCGTGTCATCAGTCAGTGCGATGCTTTCAGCAACCTGTTGCTCTTCACGTACCAGTTCGATGAATGTGTCGTTGACCGGCAACCCAT  >  NC_000913/1121433‑1121697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A