Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A24 F60 I1 R1 14 76.3 2604456 98.8% 2573202 138.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,129,083 T→C G415G (GGT→GGC)  murJ → putative lipid II flippase MurJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,129,0830TC100.0% 371.1 / NA 94G415G (GGT→GGC) murJputative lipid II flippase MurJ
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (55/39);  total (55/39)

TTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGCTTTTAG  >  NC_000913/1128946‑1129219
                                                                                                                                         |                                                                                                                                        
ttGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCt                                                                                                                                        >  1:302652/1‑140 (MQ=255)
      ccTGGATTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTggcggc                                                                                                                                  <  1:446810/140‑1 (MQ=255)
        tGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCgt                                                                                                                                >  1:299989/1‑140 (MQ=255)
        tGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCgt                                                                                                                                >  2:92095/1‑140 (MQ=255)
        tGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCgt                                                                                                                                >  2:765843/1‑140 (MQ=255)
                    ccGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCtt                                                                                                                    <  2:1254802/140‑1 (MQ=255)
                    ccGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCtt                                                                                                                    <  2:299989/140‑1 (MQ=255)
                      gCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCg                                                                                                                  >  2:377311/1‑140 (MQ=255)
                        cAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCgct                                                                                                                <  1:311443/140‑1 (MQ=255)
                         aGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCgctg                                                                                                               <  1:92095/140‑1 (MQ=255)
                                tAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACt                                                                                                        >  1:1274785/1‑140 (MQ=255)
                                    aCGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCa                                                                                                    <  1:377311/140‑1 (MQ=255)
                                     cGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAg                                                                                                   >  2:1151241/1‑140 (MQ=255)
                                     cGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAg                                                                                                   >  2:1140729/1‑140 (MQ=255)
                                      gCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGt                                                                                                  >  1:607809/1‑140 (MQ=255)
                                      gCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGt                                                                                                  >  2:1029499/1‑140 (MQ=255)
                                       ccAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGGTGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGtt                                                                                                 >  1:106455/1‑140 (MQ=255)
                                       ccAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGtt                                                                                                 >  2:525116/1‑140 (MQ=255)
                                       ccAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGtt                                                                                                 >  1:1070639/1‑140 (MQ=255)
                                        cAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTg                                                                                                >  1:125197/1‑140 (MQ=255)
                                        cAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTg                                                                                                >  2:402325/1‑140 (MQ=255)
                                         aGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGc                                                                                               >  1:970485/1‑140 (MQ=255)
                                            gAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTa                                                                                            <  2:1274785/140‑1 (MQ=255)
                                            gAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTa                                                                                            <  1:765843/140‑1 (MQ=255)
                                                  tGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGa                                                                                      <  1:419886/140‑1 (MQ=255)
                                                  tGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGa                                                                                      >  2:1189678/1‑140 (MQ=255)
                                                    ccATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGaaa                                                                                    >  1:1301728/1‑140 (MQ=255)
                                                        cGTTACGCTGATTTTAACGCAGTTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCt                                                                                >  2:873138/1‑140 (MQ=255)
                                                                  aTTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCa                                                                      >  1:315410/1‑140 (MQ=255)
                                                                  aTTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCa                                                                      >  1:667352/1‑140 (MQ=255)
                                                                    tttAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAAc                                                                    >  2:492171/1‑140 (MQ=255)
                                                                     ttAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAAcc                                                                   <  1:1140729/140‑1 (MQ=255)
                                                                       aaCGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCg                                                                 >  1:1277615/1‑140 (MQ=255)
                                                                            aaTTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTgg                                                            >  2:1264378/1‑140 (MQ=255)
                                                                              ttGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGAt                                                          <  1:1042096/140‑1 (MQ=255)
                                                                                gatgaACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATgg                                                        <  1:873138/140‑1 (MQ=255)
                                                                                  tgaACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCg                                                      >  2:1082409/1‑140 (MQ=255)
                                                                                   gaACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGt                                                     >  2:1095171/1‑140 (MQ=255)
                                                                                      ccTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGAt                                                          >  2:26295/1‑132 (MQ=255)
                                                                                      ccTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGAt                                                          <  1:26295/132‑1 (MQ=255)
                                                                                         ggCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGt                                               >  1:407660/1‑140 (MQ=255)
                                                                                         ggCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGt                                               >  1:178232/1‑140 (MQ=255)
                                                                                          gCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGtt                                              >  2:1030872/1‑140 (MQ=255)
                                                                                          gCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGtt                                              >  1:1272010/1‑140 (MQ=255)
                                                                                           cGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTg                                             >  2:690317/1‑140 (MQ=255)
                                                                                           cGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTg                                             >  2:996775/1‑140 (MQ=255)
                                                                                              ttATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGt                                          <  2:1277615/140‑1 (MQ=255)
                                                                                                    gTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCtggtg                                    >  2:1254394/1‑140 (MQ=255)
                                                                                                    gTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCtggtg                                    >  1:1037795/1‑140 (MQ=255)
                                                                                                    gTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCtggtg                                    >  2:757153/1‑140 (MQ=255)
                                                                                                    gTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCtggtg                                    >  1:1056029/1‑140 (MQ=255)
                                                                                                      ccGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCtggtggt                                  <  2:1037795/140‑1 (MQ=255)
                                                                                                      ccGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCtggtggt                                  <  1:690317/140‑1 (MQ=255)
                                                                                                      ccGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCtggtggt                                  <  1:402325/140‑1 (MQ=255)
                                                                                                       cGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCtggtggtg                                 >  1:909658/1‑140 (MQ=255)
                                                                                                       cGTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCtggtggtg                                 >  1:722/1‑140 (MQ=255)
                                                                                                        gTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCtggtggtgg                                <  2:1272010/140‑1 (MQ=255)
                                                                                                        gTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCtggtggtgg                                <  2:125197/140‑1 (MQ=255)
                                                                                                        gTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCtggtggtgg                                <  2:667352/140‑1 (MQ=255)
                                                                                                        gTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCtggtggtgg                                <  1:996775/140‑1 (MQ=255)
                                                                                                        gTTGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCtggtggtgg                                <  1:757153/140‑1 (MQ=255)
                                                                                                         ttGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGc                               >  2:556045/1‑140 (MQ=255)
                                                                                                         ttGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGc                               <  2:607809/140‑1 (MQ=255)
                                                                                                          tGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCtggtggtgg                                >  1:1269883/1‑138 (MQ=255)
                                                                                                          tGAAACATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCtggtggtgg                                <  2:1269883/138‑1 (MQ=255)
                                                                                                            aaaCATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGt                            <  1:1151241/140‑1 (MQ=255)
                                                                                                             aaCATGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTa                           <  2:909658/140‑1 (MQ=255)
                                                                                                                 tGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCtggtggt                                  >  1:1133288/1‑129 (MQ=255)
                                                                                                                 tGCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCtggtggt                                  <  2:1133288/129‑1 (MQ=255)
                                                                                                                  gCCGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGt                      <  1:1264378/140‑1 (MQ=255)
                                                                                                                   ccGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCtggtggt                                  >  2:372081/1‑127 (MQ=255)
                                                                                                                   ccGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCtggtggt                                  <  1:372081/127‑1 (MQ=255)
                                                                                                                   ccGGGCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTg                     >  2:1229379/1‑140 (MQ=255)
                                                                                                                      ggCTGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATg                  <  1:1229379/140‑1 (MQ=255)
                                                                                                                         tGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCt               >  2:581276/1‑140 (MQ=255)
                                                                                                                         tGTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCt               >  2:1245337/1‑140 (MQ=255)
                                                                                                                          gTCACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTg              >  2:498298/1‑140 (MQ=255)
                                                                                                                            cACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGc            <  1:1029499/140‑1 (MQ=255)
                                                                                                                            cACTTTCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGc            <  1:492171/140‑1 (MQ=255)
                                                                                                                                ttCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGc        >  2:94856/1‑140 (MQ=255)
                                                                                                                                ttCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGc        <  1:1030872/140‑1 (MQ=255)
                                                                                                                                ttCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGc        <  1:1254394/140‑1 (MQ=255)
                                                                                                                                ttCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGc        <  2:407660/140‑1 (MQ=255)
                                                                                                                                ttCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGc        >  1:372791/1‑140 (MQ=255)
                                                                                                                                ttCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGc        >  1:377319/1‑140 (MQ=255)
                                                                                                                                ttCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGc        >  2:1118087/1‑140 (MQ=255)
                                                                                                                                 tCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGc        <  1:169703/139‑1 (MQ=255)
                                                                                                                                 tCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGc        >  2:169703/1‑139 (MQ=255)
                                                                                                                                 tCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGCt       >  2:607646/1‑140 (MQ=255)
                                                                                                                                 tCTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGCt       >  2:968011/1‑140 (MQ=255)
                                                                                                                                  cTATTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGCtt      >  1:542559/1‑140 (MQ=255)
                                                                                                                                    aTTGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGCtttt    <  2:1070639/140‑1 (MQ=255)
                                                                                                                                     ttGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGCTTTTa   >  1:175562/1‑140 (MQ=255)
                                                                                                                                     ttGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGCTTTTa   <  2:315410/140‑1 (MQ=255)
                                                                                                                                      tGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGCTTTTAg  <  2:377319/140‑1 (MQ=255)
                                                                                                                                      tGGCCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGCTTTTAg  <  1:1082409/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
TTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGCTTTTAG  >  NC_000913/1128946‑1129219

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A