Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A42 F60 I1 R1 20 78.9 2679734 98.6% 2642217 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,003,601 2 bp→AA coding (163‑164/516 nt) ycbV → putative fimbrial protein YcbV

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,003,6010TA100.0% 266.0 / NA 75S55K (TCG→AAG) ycbVputative fimbrial protein YcbV
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base A (40/35);  total (40/35)
*NC_0009131,003,6020CA100.0% 266.0 / NA 75S55K (TCG→AAG) ycbVputative fimbrial protein YcbV
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (40/35);  total (40/35)

ATTAACGTGGGGCTGTGAGCTATTTGCCCATGATGGCACGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCTCGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAACCCCCGACGGAGTGCAGAGCGAAA  >  NC_000913/1003477‑1003733
                                                                                                                            ||                                                                                                                                   
aTTAACGTGGGGCTGTGAGCTATTTGCCCATGATGGCACGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGttttt                                                                                                                       <  2:1087457/140‑1 (MQ=255)
aTTAACGTGGGGCTGTGAGCTATTTGCCCATGATGGCACGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGttttt                                                                                                                       <  1:1162250/140‑1 (MQ=255)
     cGTGGGGCTGTGAGCTATTTGCCCATGATGGCACGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTGAAGCTGACACGTTTTTCTCAt                                                                                                                  <  2:677433/140‑1 (MQ=255)
       tGGGGCTGTGAGCTATTTGCCCATGATGGCACGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATgg                                                                                                                <  2:341247/140‑1 (MQ=255)
        ggggCTGGGAGCTATTTGCCCATGATGGCAGGGTCAACATTAGCGGACGGTTTCCCCGTAATACATCCGTGCTGGCACAGAATATCAGGCAAATCAATGGGGAGTTAGGCGATGTCAAGCTGACTCCTTTTTCTCATggg                                                                                                               <  2:317462/140‑1 (MQ=255)
         gggCTGTGAGCTATTTGCCCATGATGGCACGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGa                                                                                                              >  1:917016/1‑140 (MQ=255)
         gggCTGTGAGCTATTTGCCCATGATGGCACGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGa                                                                                                              >  1:1177706/1‑140 (MQ=255)
              gtgAGCTATTTGCCCATGATGGCACGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTa                                                                                                          >  1:1216089/1‑139 (MQ=255)
              gtgAGCTATTTGCCCATGATGGCACGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTa                                                                                                          <  2:1216089/139‑1 (MQ=255)
                gAGCTATTTGCCCATGATGGCACGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTtct                                                                                                                     <  1:685247/126‑1 (MQ=255)
                gAGCTATTTGCCCATGATGGCACGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTtct                                                                                                                     >  2:685247/1‑126 (MQ=255)
                 aGCTATTTGCCCATGATGGCACGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGc                                                                                                      <  2:71846/140‑1 (MQ=255)
                    tATTTGCCCATGATGGCACGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTtctc                                                                                                                    <  2:34185/123‑1 (MQ=255)
                    tATTTGCCCATGATGGCACGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTtctc                                                                                                                    >  1:34185/1‑123 (MQ=255)
                    tATTTGCCCATGATGGCACGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCg                                                                                                   >  2:884922/1‑140 (MQ=255)
                      tttGCCCATGATGGCACGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGga                                                                                                 <  1:1180285/140‑1 (MQ=255)
                         gCCCATGATGGCACGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGaa                                                                                              >  1:804591/1‑140 (MQ=255)
                           ccATGATGGCACGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAAt                                                                                            >  1:1183307/1‑140 (MQ=255)
                                    cACGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTtcatca                                                                                   >  2:106317/1‑140 (MQ=255)
                                    cACGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTtcatca                                                                                   >  1:974559/1‑140 (MQ=255)
                                     aCGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTcatcat                                                                                  <  1:509003/140‑1 (MQ=255)
                                               ttAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAg                                                                        <  2:182461/140‑1 (MQ=255)
                                                 aGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGa                                                                      <  1:844683/140‑1 (MQ=255)
                                                  gCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGAt                                                                     >  2:684779/1‑140 (MQ=255)
                                                   cGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGAtt                                                                    >  2:872798/1‑140 (MQ=255)
                                                   cGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGAtt                                                                    >  2:1113663/1‑140 (MQ=255)
                                                   cGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGAtt                                                                    >  1:1155065/1‑140 (MQ=255)
                                                   cGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGAtt                                                                    >  1:1035011/1‑140 (MQ=255)
                                                    ggATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTg                                                                   <  1:1333895/140‑1 (MQ=255)
                                                      aTCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCg                                                                 <  1:474849/140‑1 (MQ=255)
                                                      aTCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCg                                                                 <  2:1254266/140‑1 (MQ=255)
                                                           ttCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACa                                                            <  1:959995/140‑1 (MQ=255)
                                                                cGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGt                                                       >  1:1054860/1‑140 (MQ=255)
                                                                   aaTACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAg                                                    <  1:884922/140‑1 (MQ=255)
                                                                   aaTACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAg                                                    <  2:358591/140‑1 (MQ=255)
                                                                    aTACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGc                                                   >  2:1225768/1‑140 (MQ=255)
                                                                       cATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACg                                                <  2:917016/140‑1 (MQ=255)
                                                                          gCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAg                                                    <  2:768376/133‑1 (MQ=255)
                                                                          gCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAg                                                    >  1:768376/1‑133 (MQ=255)
                                                                          gCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGtt                                             <  2:1054419/140‑1 (MQ=255)
                                                                            gTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCa                                                  >  1:303552/1‑133 (MQ=255)
                                                                            gTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCa                                                  <  2:303552/133‑1 (MQ=255)
                                                                             tGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGAc                                          >  1:323574/1‑140 (MQ=255)
                                                                               cTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGt                                        <  1:684779/140‑1 (MQ=255)
                                                                               cTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGt                                        >  2:427253/1‑140 (MQ=255)
                                                                                tGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTc                                       <  2:1183307/140‑1 (MQ=255)
                                                                                   cacaGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCAcc                                    >  2:331703/1‑140 (MQ=255)
                                                                                    acaGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCt                                   >  2:1322003/1‑140 (MQ=255)
                                                                                    acaGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGG‑ATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCtt                                  >  2:1242087/1‑140 (MQ=255)
                                                                                        gATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTc                               >  1:1278577/1‑140 (MQ=255)
                                                                                            gcaagcaaATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGa                           >  2:572386/1‑140 (MQ=255)
                                                                                            gcaagcaaATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGa                           <  1:1113663/140‑1 (MQ=255)
                                                                                            gcaagcaaATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGa                           >  2:134480/1‑140 (MQ=255)
                                                                                            gcaagcaaATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGa                           >  1:251408/1‑140 (MQ=255)
                                                                                             caagcaaATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGaa                          >  1:1121939/1‑140 (MQ=255)
                                                                                             caagcaaATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGaa                          >  1:400806/1‑140 (MQ=255)
                                                                                              aagcaaATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAAc                         >  2:93949/1‑140 (MQ=255)
                                                                                                 caaATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATTTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAAcccc                      >  2:1306184/1‑140 (MQ=255)
                                                                                                 caaATCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAAcccc                      <  1:1322003/140‑1 (MQ=255)
                                                                                                  aaaTCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAAccccc                     >  2:676749/1‑140 (MQ=255)
                                                                                                  aaaTCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAAcccc                      <  2:768123/139‑1 (MQ=255)
                                                                                                  aaaTCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAAcccc                      >  1:768123/1‑139 (MQ=255)
                                                                                                  aaaTCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCAGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAAccccc                     >  2:910850/1‑140 (MQ=255)
                                                                                                   aaTCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAACCCCCg                    <  2:1054860/140‑1 (MQ=255)
                                                                                                     tCAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAACCCCCGAc                  <  1:872798/140‑1 (MQ=255)
                                                                                                      cAATGTGCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAACCCCCGACg                 <  1:106317/140‑1 (MQ=255)
                                                                                                            gCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAACCCCCGACGGAGTGc           <  2:1278577/140‑1 (MQ=255)
                                                                                                            gCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAACCCCCGACGGAGTGc           <  1:999388/140‑1 (MQ=255)
                                                                                                            gCAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAACCCCCGACGGAGTGc           >  1:93028/1‑140 (MQ=255)
                                                                                                             cAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAACCCCCGACGGAGTGCa          <  2:251408/140‑1 (MQ=255)
                                                                                                             cAGTTAGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAACCCCCGACGGAGTGCa          <  2:974559/140‑1 (MQ=255)
                                                                                                                  aGGCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAACCCCCGACGGAGTGCAGAGCg     <  1:676749/140‑1 (MQ=255)
                                                                                                                   ggCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAACCCCCGACGGAGTGCAGAGCGa    >  2:1097886/1‑140 (MQ=255)
                                                                                                                    gCGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAACCCCCGACGGAGTGCAGAGCGaa   >  1:545052/1‑140 (MQ=255)
                                                                                                                     cGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAACCCCCGACGGAGTGCAGAGCGaaa  >  2:646985/1‑140 (MQ=255)
                                                                                                                     cGATGTCAAGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAACCCCCGACGGAGTGCAGAGCGaaa  >  1:244191/1‑140 (MQ=255)
                                                                                                                            ||                                                                                                                                   
ATTAACGTGGGGCTGTGAGCTATTTGCCCATGATGGCACGGTCAACATTAGCGGATCGTTTCGCCGTAATACATGCGTGCTGGCACAGGATAGCAAGCAAATCAATGTGCAGTTAGGCGATGTCTCGCTGACACGTTTTTCTCATGGGAATTATGGCCCGGAGAAATCTTTCATCATTAATTTGCAGGATTGCGGAACAGATGTCAGCACGGTTGACGTCACCTTTTCAGGAACCCCCGACGGAGTGCAGAGCGAAA  >  NC_000913/1003477‑1003733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A