Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A45 F60 I1 R1 18 98.3 3347606 98.6% 3300739 138.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,351,999 T→C G212G (GGA→GGG)  sapF ← putrescine ABC exporter ATP binding protein SapF

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,351,9990TC100.0% 343.2 / NA 88G212G (GGA→GGG) sapFputrescine ABC exporter ATP binding protein SapF
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (42/46);  total (42/46)

CCTCGCCAAAATGACCGGCAATCAGCCGTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATTCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCGAGGGCTTCATCGGCAATAATGACTTTTGGGCG  >  NC_000913/1351863‑1352133
                                                                                                                                        |                                                                                                                                      
ccTCGCCAAAATGACCGGCAATCAGCCGTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCg                                                                                                                                     <  1:224099/140‑1 (MQ=255)
ccTCGCCAAAATGACCGGCAATCAGCCGTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCg                                                                                                                                     <  1:1549387/140‑1 (MQ=255)
ccTCGCCAAAATGACCGGCAATCAGCCGTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCg                                                                                                                                     <  1:1306943/140‑1 (MQ=255)
  tCGCCAAAATGACCGGCAATCAGCCGTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGat                                                                                                                                   <  2:73713/140‑1 (MQ=255)
  tCGCCAAAATGACCGGCAATCAGCCGTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGG‑‑‑TGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATg                                                                                                                                <  1:570164/140‑1 (MQ=255)
    gCCAAAATGACCGGCAATCAGCCGTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGatat                                                                                                                                 >  2:900273/1‑140 (MQ=255)
    gCCAAAATGACCGGCAATCAGCCGTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGatat                                                                                                                                 >  2:1226657/1‑140 (MQ=255)
     ccAAAATGACCGGCAATCAGCCGTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATg                                                                                                                                <  1:1630664/140‑1 (MQ=255)
     ccAAAATGACCGGCAATCAGCCGTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATg                                                                                                                                <  2:862146/140‑1 (MQ=255)
       aaaaTGACCGGCAATCAGCCGTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCt                                                                                                                              <  1:1226657/140‑1 (MQ=255)
       aaaaTGACCGGCAATCAGCCGTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCt                                                                                                                              <  2:1509713/140‑1 (MQ=255)
          aTGACCGGCAATCAGCCGTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTggg                                                                                                                           <  2:594722/140‑1 (MQ=255)
          aTGACCGGCAATCAGCCGTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTggg                                                                                                                           <  2:229468/140‑1 (MQ=255)
           tGACCGGCAATCAGCCGTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGt                                                                                                                          <  1:214983/140‑1 (MQ=255)
           tGACCGGCAATCAGCCGTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGt                                                                                                                          <  1:1064940/140‑1 (MQ=255)
            gACCGGCAATCAGCCGTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTa                                                                                                                         >  1:335880/1‑140 (MQ=255)
              ccGGCAATCAGCCGTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAAc                                                                                                                       >  2:449021/1‑140 (MQ=255)
                      cAGCCGTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAatat                                                                                                               <  1:1416914/140‑1 (MQ=255)
                           gTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGaa                                                                                                          <  1:449021/140‑1 (MQ=255)
                           gTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGaa                                                                                                          <  2:1233937/140‑1 (MQ=255)
                            tttGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTggg                                                                                                                           >  2:1223775/1‑122 (MQ=255)
                            tttGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTggg                                                                                                                           <  1:1223775/122‑1 (MQ=255)
                            tttGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGt                                                                                                                          <  2:1005811/123‑1 (MQ=255)
                            tttGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGt                                                                                                                          >  1:1005811/1‑123 (MQ=255)
                                 tGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGccc                                                                                                    <  2:1035982/140‑1 (MQ=255)
                                   aGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTg                                                                                                  >  2:1385751/1‑140 (MQ=255)
                                    gTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGt                                                                                                 <  2:1274938/140‑1 (MQ=255)
                                     ttCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGc                                                                                                      <  2:1359278/134‑1 (MQ=255)
                                     ttCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGc                                                                                                      >  1:1481545/1‑134 (MQ=255)
                                     ttCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGc                                                                                                      <  2:1481545/134‑1 (MQ=255)
                                     ttCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGc                                                                                                      >  1:1359278/1‑134 (MQ=255)
                                       cATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGtttt                                                                                              >  2:1166642/1‑140 (MQ=255)
                                        aTGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGttttt                                                                                             <  1:1310359/140‑1 (MQ=255)
                                        aTGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGttttt                                                                                             <  1:578481/140‑1 (MQ=255)
                                                gcgATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAAt                                                                                     >  2:209855/1‑140 (MQ=255)
                                                  gATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTc                                                                                   <  1:303468/140‑1 (MQ=255)
                                                  gATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTc                                                                                   <  1:1385751/140‑1 (MQ=255)
                                                        aGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCAt                                                                             <  2:1590532/140‑1 (MQ=255)
                                                          cacaTCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCAt                                                                             >  1:61974/1‑138 (MQ=255)
                                                          cacaTCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCAt                                                                             <  2:61974/138‑1 (MQ=255)
                                                              tCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGa                                                                         <  1:1200876/138‑1 (MQ=255)
                                                              tCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGa                                                                         >  2:1200876/1‑138 (MQ=255)
                                                              tCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGAtt                                                                       >  1:716182/1‑140 (MQ=255)
                                                               ccGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTa                                                                      >  1:624758/1‑140 (MQ=255)
                                                               ccGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTa                                                                      >  1:1425389/1‑140 (MQ=255)
                                                                    gTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCaa                                                                 >  2:522285/1‑140 (MQ=255)
                                                                       ctgcCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCa                                                                           >  1:207429/1‑127 (MQ=255)
                                                                       ctgcCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCa                                                                           <  2:207429/127‑1 (MQ=255)
                                                                       ctgcCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTg                                                              >  2:726121/1‑140 (MQ=255)
                                                                       ctgcCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTg                                                              >  2:1034085/1‑140 (MQ=255)
                                                                         gcCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCg                                                            >  2:1229086/1‑140 (MQ=255)
                                                                         gcCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCg                                                            <  2:1230540/140‑1 (MQ=255)
                                                                          ccTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGa                                                           >  1:52202/1‑140 (MQ=255)
                                                                          ccTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGa                                                           >  2:1632803/1‑140 (MQ=255)
                                                                               ctcgACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCa                                                      <  1:726121/140‑1 (MQ=255)
                                                                                 cgACAACCTCGCCCTGATGCATCACCAGCGCCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATc                                                    <  1:1229086/140‑1 (MQ=255)
                                                                                 cgACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATc                                                    <  2:993149/140‑1 (MQ=255)
                                                                                    cAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGa                                                           >  2:771857/1‑130 (MQ=255)
                                                                                    cAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGa                                                           <  1:771857/130‑1 (MQ=255)
                                                                                    cAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGa                                                           <  1:7681/130‑1 (MQ=255)
                                                                                    cAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGa                                                           >  2:7681/1‑130 (MQ=255)
                                                                                    cAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGa                                                           >  2:190460/1‑130 (MQ=255)
                                                                                    cAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGa                                                           <  1:190460/130‑1 (MQ=255)
                                                                                    cAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGAc                                                 <  1:1166642/140‑1 (MQ=255)
                                                                                    cAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGAc                                                 <  2:1425389/140‑1 (MQ=255)
                                                                                    cAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGAc                                                 <  1:789881/140‑1 (MQ=255)
                                                                                    cAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGAc                                                 >  2:153156/1‑140 (MQ=255)
                                                                                    cAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGAc                                                 >  2:1583705/1‑140 (MQ=255)
                                                                                              cTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTg                                       >  2:265407/1‑140 (MQ=255)
                                                                                                   gCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCg                                  <  2:624758/140‑1 (MQ=255)
                                                                                                       cACCAGCACCTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCGAggg                              >  1:383225/1‑140 (MQ=255)
                                                                                                               ccTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCGAGGGCTTCATCg                      <  2:1078475/140‑1 (MQ=255)
                                                                                                                cTGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCGAGGGCTTCATCgg                     >  1:156501/1‑140 (MQ=255)
                                                                                                                 tGGTCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCGAGGGCTTCATCGGc                    >  2:495324/1‑140 (MQ=255)
                                                                                                                    tCGCTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCGAGGGCTTCATCGGCaat                 >  2:261589/1‑140 (MQ=255)
                                                                                                                       cTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCGAGGGCTTCATCGGCaataat              <  1:1486752/140‑1 (MQ=255)
                                                                                                                       cTAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCGAGGGCTTCATCGGCaataat              >  1:753664/1‑140 (MQ=255)
                                                                                                                        tAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCGAGGGCTTCATCGGCAATAATg             >  2:643137/1‑140 (MQ=255)
                                                                                                                        tAATGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCGAGGGCTTCATCGGCAATAATg             >  1:1558897/1‑140 (MQ=255)
                                                                                                                          aTGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCGAGGGCTTCATCgg                     >  2:421744/1‑130 (MQ=255)
                                                                                                                          aTGTGCTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCGAGGGCTTCATCgg                     <  1:421744/130‑1 (MQ=255)
                                                                                                                             tgCTTCATCATCCCGATATGCTGCGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCGAGGGCTTCATCGGCAATAATGACttt        >  2:1433032/1‑140 (MQ=255)
                                                                                                                               cTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCGAGGGCTTCATCGGCAATAATGACTTTTg      <  1:643137/140‑1 (MQ=255)
                                                                                                                               cTTCATCATCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCGAGGGCTTCATCGGCAATAATGACTTTTg      >  1:554517/1‑140 (MQ=255)
                                                                                                                                 tcatcaTCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCGAGGGCTTCATCGGCAATAATGACTTTTggg    >  1:752037/1‑140 (MQ=255)
                                                                                                                                  catcatCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCGAGGGCTTCATCGGCAATAATGACTTTTGGgc   >  1:1283859/1‑140 (MQ=255)
                                                                                                                                   atcatcCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCGAGGGCTTCATCGGCAATAATGACTTTTGGgcg  <  2:753664/140‑1 (MQ=255)
                                                                                                                                    tcatCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCGAGGGCTTCATCGGCAATAATGACTTTTGGgcg  <  1:1033740/139‑1 (MQ=255)
                                                                                                                                    tcatCCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCGAGGGCTTCATCGGCAATAATGACTTTTGGgcg  >  2:1033740/1‑139 (MQ=255)
                                                                                                                                        |                                                                                                                                      
CCTCGCCAAAATGACCGGCAATCAGCCGTTTGGTGAGTTCATGCAGCGGCGATGCCAGCACATCCGCGGTGCTGCCTCGCTCGACAACCTCGCCCTGATGCATCACCAGCACCTGGTCGCTAATGTGCTTCATCATTCCGATATGCTGGGTAACATAAATATACGAAATGCCCTGTTTTTCCTGTAATTCCAGCATCAGATTAATCAACTGCGAACGCATCGACATATCCAGTGAAGCGAGGGCTTCATCGGCAATAATGACTTTTGGGCG  >  NC_000913/1351863‑1352133

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A