Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A40 F60 I1 R1 23 105.9 3634506 98.9% 3594526 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,353,900 C→A A207S (GCT→TCT)  sapC ← putrescine ABC exporter membrane protein SapC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,353,9000CA100.0% 290.5 / NA 83A207S (GCT→TCT) sapCputrescine ABC exporter membrane protein SapC
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (42/41);  total (42/41)

AGCATCGCTCCCCATTCAGGCGAGGGGAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCCAGACAGCAAACA  >  NC_000913/1353764‑1354034
                                                                                                                                        |                                                                                                                                        
aGCATCGCTCCCCATTCAGGCGAGGGGAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATAACAGaaaa                                                                                                                                       >  1:1077509/1‑140 (MQ=255)
 gCATCGCTCCCCATTCAGGCGAGGGGAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGCTGTTTGGCATCACAGAAAAc                                                                                                                                      >  1:1750023/1‑140 (MQ=255)
  cATCGCTCCCCATTCAGGCGAGGGGAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAAcc                                                                                                                                     <  1:1267877/140‑1 (MQ=255)
     cGCTCCCCATTCAGGCGAGGGGAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAATCaga                                                                                                                                  >  2:1426303/1‑140 (MQ=255)
     cGCTCCCCATTCAGGCGAGGGGAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCaga                                                                                                                                  >  2:935594/1‑140 (MQ=255)
     cGCTCCCCATTCAGGCGAGGGGAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGAGGTTTGGCATCACAAAAAActcga                                                                                                                                  >  2:384943/1‑136 (MQ=255)
       cTCCCCATTCAGGCGAGGGGAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAgaga                                                                                                                                <  2:298458/140‑1 (MQ=255)
       cTCCCCATTCAGGCGAGGGGAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGGGATGTTTGGCATCACAGAAAACCAgaga                                                                                                                                >  2:1016470/1‑140 (MQ=255)
            cATTCAGGCGAGGGGAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATAtt                                                                                                                           >  1:113608/1‑140 (MQ=255)
              ttCAGGCGAGGGGAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCa                                                                                                                         >  1:1140383/1‑140 (MQ=255)
               tCAGGCGAGGGGAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAg                                                                                                                        >  2:285117/1‑140 (MQ=255)
                    cGAGGGGAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTg                                                                                                                   <  2:1140383/140‑1 (MQ=255)
                    cGAGGGGAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTg                                                                                                                   >  2:770867/1‑140 (MQ=255)
                    cGAGGGGAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTg                                                                                                                   <  1:1794579/140‑1 (MQ=255)
                      aGGGGAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCCCAGAAAACCAAAAAAAATTCAGCGTTGAt                                                                                                                 >  2:1794579/1‑140 (MQ=255)
                       ggggAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATg                                                                                                                <  1:919928/140‑1 (MQ=255)
                        gggAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATgc                                                                                                               >  1:1128611/1‑140 (MQ=255)
                        gggAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATgc                                                                                                               >  2:1117457/1‑140 (MQ=255)
                        gggAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATgc                                                                                                               >  2:1295478/1‑140 (MQ=255)
                         ggAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATgcg                                                                                                              <  2:1685411/140‑1 (MQ=255)
                         ggAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATgcg                                                                                                              <  2:1467133/140‑1 (MQ=255)
                             ttGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCAt                                                                                                          >  2:1356522/1‑140 (MQ=255)
                                  cgcCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGa                                                                                                     >  1:1513557/1‑140 (MQ=255)
                                  cgcCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGa                                                                                                     <  2:380415/140‑1 (MQ=255)
                                    ccGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACg                                                                                                   >  1:869605/1‑140 (MQ=255)
                                      gagaTCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACggg                                                                                                 <  2:197078/140‑1 (MQ=255)
                                       agaTCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGggc                                                                                                >  2:750849/1‑140 (MQ=255)
                                           cGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGgcggcg                                                                                            <  1:997674/140‑1 (MQ=255)
                                           cGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGgcggcg                                                                                            <  1:774950/140‑1 (MQ=255)
                                           cGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGgcggcg                                                                                            <  2:1408998/140‑1 (MQ=255)
                                           cGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGgcggcg                                                                                            <  2:469472/140‑1 (MQ=255)
                                                 aGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGCTAACg                                                                                      >  2:1266674/1‑140 (MQ=255)
                                                 aGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACg                                                                                      >  2:343081/1‑140 (MQ=255)
                                                 aGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAACCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACg                                                                                      >  2:1249404/1‑140 (MQ=255)
                                                  gCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGt                                                                                     <  2:1513387/140‑1 (MQ=255)
                                                  gCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGt                                                                                     <  2:619256/140‑1 (MQ=255)
                                                   cccAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGCATATTCAGCGTTGATGCGCCATCCAGACGGGCCGCGATAACgca                                                                                    >  2:1278433/1‑138 (MQ=255)
                                                   cccAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTa                                                                                    >  2:69970/1‑140 (MQ=255)
                                                       gcgcgcCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGGGGCCAGCCCGGCGGCGCTGTTTCGCATCACCACCAACCAGCAAATATTCCGACATCATGCGGCATCCAGACGGGCGGCGATAACGGActcc                                                                                >  2:961144/1‑139 (MQ=255)
                                                       gcgcGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTActct                                                                                >  2:486957/1‑140 (MQ=255)
                                                       gcgcGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTAc                                                                                   >  1:1583809/1‑137 (MQ=255)
                                                       gcgcGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTAc                                                                                   <  2:1583809/137‑1 (MQ=255)
                                                        cgcgGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGgcggcg                                                                                            >  1:1573996/1‑127 (MQ=255)
                                                        cgcgGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGgcggcg                                                                                            <  2:1573996/127‑1 (MQ=255)
                                                        cgcgGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCtt                                                                               >  2:908371/1‑140 (MQ=255)
                                                        cgcgGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCtt                                                                               >  2:822537/1‑140 (MQ=255)
                                                        cgcgGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCtt                                                                               >  1:549675/1‑140 (MQ=255)
                                                              gATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCa                                                                       <  2:1192474/140‑1 (MQ=255)
                                                                tatCGAGAATTGCCATCGCCAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGt                                                                     <  2:1750023/140‑1 (MQ=255)
                                                                tatCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGt                                                                     <  1:334887/140‑1 (MQ=255)
                                                                tatCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGt                                                                     <  1:935594/140‑1 (MQ=255)
                                                                  tCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAAACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTc                                                                   >  1:407364/1‑140 (MQ=255)
                                                                     agaATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTc                                                                <  1:1796810/140‑1 (MQ=255)
                                                                     agaATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTc                                                                <  1:1457243/140‑1 (MQ=255)
                                                                     agaATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTc                                                                <  1:1362973/140‑1 (MQ=255)
                                                                       aaTTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCAt                                                              >  2:1212782/1‑140 (MQ=255)
                                                                        aTTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATg                                                             <  1:1182703/140‑1 (MQ=255)
                                                                          tGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCa                                                           <  1:822537/140‑1 (MQ=255)
                                                                          tGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCa                                                           <  1:178430/140‑1 (MQ=255)
                                                                            ccATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCAcc                                                         <  2:474541/140‑1 (MQ=255)
                                                                            ccATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCAcc                                                         >  2:531218/1‑140 (MQ=255)
                                                                            ccATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCAcc                                                         <  1:1165891/140‑1 (MQ=255)
                                                                            ccATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCAcc                                                         <  2:348817/140‑1 (MQ=255)
                                                                              aTCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACTAt                                                       <  2:1077509/140‑1 (MQ=255)
                                                                                cGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGc                                                     >  1:188241/1‑140 (MQ=255)
                                                                                 gACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCt                                                    <  2:1195515/140‑1 (MQ=255)
                                                                                     gTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTaa                                                <  1:1365179/140‑1 (MQ=255)
                                                                                      tGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTaaa                                               >  2:1561794/1‑140 (MQ=255)
                                                                                          cgGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTAAATCGa                                           <  1:770867/140‑1 (MQ=255)
                                                                                                aTCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTAc                                     >  2:306944/1‑140 (MQ=255)
                                                                                                aTCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTAc                                     >  1:944661/1‑140 (MQ=255)
                                                                                                  ctcGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCa                                   <  2:944661/140‑1 (MQ=255)
                                                                                                          ccAGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGgc                           <  2:191542/140‑1 (MQ=255)
                                                                                                            aGCCCGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGgcag                         <  1:69970/140‑1 (MQ=255)
                                                                                                              cccGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGgcagca                       >  2:1028829/1‑140 (MQ=255)
                                                                                                              cccGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGgcagca                       >  1:1663374/1‑140 (MQ=255)
                                                                                                               ccGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCaa                      >  1:381618/1‑140 (MQ=255)
                                                                                                               ccGGCGGTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCaa                      >  1:1315067/1‑140 (MQ=255)
                                                                                                                cggcggTGATGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAAt                     <  1:910068/140‑1 (MQ=255)
                                                                                                                        aTGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCCTGCACCATGCTTTAAATCGAACGTACCATACGCGGCAGCAATgccagcca             >  2:1741113/1‑140 (MQ=255)
                                                                                                                        aTGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATgccagcca             >  1:1008526/1‑140 (MQ=255)
                                                                                                                        aTGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATgccagcca             >  1:1510857/1‑140 (MQ=255)
                                                                                                                         tGTTTGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGccagccag            <  1:750849/140‑1 (MQ=255)
                                                                                                                           tttGGCATCACAGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTTTCTCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGccagccag            <  1:908371/140‑1 (MQ=255)
                                                                                                                                   cacaGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGccagccag            >  1:1719056/1‑130 (MQ=255)
                                                                                                                                   cacaGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGccagccag            <  2:1719056/130‑1 (MQ=255)
                                                                                                                                   cacaGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCCAGACAGCAAACa  <  2:869605/140‑1 (MQ=255)
                                                                                                                                   cacaGAAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCCAGACAGCAAACa  <  1:1295478/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
AGCATCGCTCCCCATTCAGGCGAGGGGAGTTGTGCGCCGAGATCGAGAAAGCCCAGCGCGGCGATATCGAGAATTGCCATCGACAGTGCGCGGGTGATCTCGGTGACCAGCCCGGCGGTGATGTTTGGCATCACAGCAAACCAGAGAATATTCAGCGTTGATGCGCCATCCAGACGGGCGGCGATAACGTACTCTTTT‑‑TCCAGTTCGTCATGCACCATGCTGTAAATCGAACGTACCATACGCGGCAGCAATGCCAGCCAGACAGCAAACA  >  NC_000913/1353764‑1354034

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A