Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A45 F60 I1 R1	18	98.3	3347606	98.6%	3300739	138.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,417,315	C→A	L122M (CTG→ATG)	yjfP →	carboxylesterase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,417,315	0	C	A	100.0%	412.8 / NA	119	L122M (CTG→ATG)	yjfP	carboxylesterase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (58/61); total (58/61)

Only 100 of 119 total aligned reads displayed.

TTCTGGCAAATCTTGCTACAAAGTATGCAGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAACGGCAGCACAGCAGAATGAA  >  NC_000913/4417189‑4417443

   tGGCAAATCTTGCTACAAAGTATGCAGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCg                                                                                                                  <  2:52397/140‑1 (MQ=255)

   tGGCAAATCTTGCTACAAAGTATGCAGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCg                                                                                                                  <  1:607056/140‑1 (MQ=255)

     gCAAATCTTGCTACAAAGTATGCAGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGcc                                                                                                                >  2:871179/1‑140 (MQ=255)

     gCAAATCTTGCTACAAAGTATGCAGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGcc                                                                                                                >  2:1197223/1‑140 (MQ=255)

          tCTTGCTACAAAGTATGCAGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCAcccc                                                                                                           <  1:522347/140‑1 (MQ=255)

           cTTGCTACAAAGTATGCAGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCa                                                                                                          <  2:243875/140‑1 (MQ=255)

           cTTGCTACAAAGTATGCAGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCa                                                                                                          <  2:273347/140‑1 (MQ=255)

             tGCTACAAAGTATGCAGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACg                                                                                                        >  1:1077154/1‑140 (MQ=255)

             tGCTACAAAGTATGCAGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACg                                                                                                        >  2:1326763/1‑140 (MQ=255)

              gCTACAAAGTATGCAGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCg                                                                                                                      <  1:1560857/125‑1 (MQ=255)

              gCTACAAAGTATGCAGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCg                                                                                                                      >  2:1560857/1‑125 (MQ=255)

                 aCAAAGTATGCAGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTga                                                                                                    <  1:1536646/140‑1 (MQ=255)

                  cAAAGTATGCAGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTgag                                                                                                   <  1:1326763/140‑1 (MQ=255)

                     aGTATGCAGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATg                                                                                                >  1:1491944/1‑140 (MQ=255)

                         tGCAGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCa                                                                                                          <  1:1497519/126‑1 (MQ=255)

                         tGCAGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTAcc                                                                                            >  1:183434/1‑140 (MQ=255)

                         tGCAGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTAcc                                                                                            >  1:1132038/1‑140 (MQ=255)

                         tGCAGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTAcc                                                                                            <  1:32417/140‑1 (MQ=255)

                            aGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGt                                                                                                      <  1:167557/127‑1 (MQ=255)

                            aGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGt                                                                                                      >  2:167557/1‑127 (MQ=255)

                            aGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGcc                                                                                         <  1:1574599/140‑1 (MQ=255)

                            aGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGcc                                                                                         >  1:612914/1‑140 (MQ=255)

                            aGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGcc                                                                                         >  2:858409/1‑140 (MQ=255)

                              gAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAg                                                                                       <  2:16720/140‑1 (MQ=255)

                              gAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAg                                                                                       <  1:1197223/140‑1 (MQ=255)

                                aTTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCa                                                                                     >  2:264736/1‑140 (MQ=255)

                                 ttCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTGCCGCTCGCCACCCCACGGTg                                                                                                     <  2:1143497/123‑1 (MQ=255)

                                 ttCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTg                                                                                                     >  1:1143497/1‑123 (MQ=255)

                                 ttCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTAc                                                                                             >  2:255647/1‑131 (MQ=255)

                                 ttCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTAc                                                                                             <  1:255647/131‑1 (MQ=255)

                                 ttCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAg                                                                                       >  2:957576/1‑137 (MQ=255)

                                 ttCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAg                                                                                       <  1:957576/137‑1 (MQ=255)

                                 ttCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCat                                                                                    >  1:1448266/1‑140 (MQ=255)

                                 ttCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCat                                                                                    >  2:1578344/1‑140 (MQ=255)

                                   cACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCatga                                                                                  >  1:810859/1‑140 (MQ=255)

                                        ctctACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGa                                                                             >  1:652242/4‑140 (MQ=255)

                                        ctTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAg                                                                                       >  2:1009736/1‑130 (MQ=255)

                                        ctTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAg                                                                                       <  1:1009736/130‑1 (MQ=255)

                                           tACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCg                                                                          >  1:1407148/1‑140 (MQ=255)

                                             cGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGa                                                                             >  2:788280/1‑135 (MQ=255)

                                             cGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGa                                                                             <  1:788280/135‑1 (MQ=255)

                                             cGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGACGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCggt                                                                        >  1:889842/1‑139 (MQ=255)

                                              gTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGc                                                                       <  2:1077154/140‑1 (MQ=255)

                                                gCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGa                                                                             >  2:1261386/1‑132 (MQ=255)

                                                gCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGa                                                                             <  1:1261386/132‑1 (MQ=255)

                                                gCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTa                                                                     <  2:724328/140‑1 (MQ=255)

                                                gCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTa                                                                     >  2:1213497/1‑140 (MQ=255)

                                                 cGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCggg                                                                        >  1:484970/1‑136 (MQ=255)

                                                 cGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCggg                                                                        <  2:484970/136‑1 (MQ=255)

                                                  ggCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGAt                                                                            >  1:970682/1‑131 (MQ=255)

                                                  ggCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCggg                                                                        <  2:720226/135‑1 (MQ=255)

                                                  ggCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTAtt                                                                   >  1:1575755/1‑140 (MQ=255)

                                                  ggCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTAtt                                                                   >  1:1371867/1‑140 (MQ=255)

                                                  ggCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGGGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCggg                                                                        >  1:720226/1‑135 (MQ=255)

                                                   gCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCggg                                                                        >  1:553903/1‑134 (MQ=255)

                                                   gCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCggg                                                                        <  2:553903/134‑1 (MQ=255)

                                                   gCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTAttt                                                                  >  1:1530393/1‑140 (MQ=255)

                                                     aaTAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTa                                                                <  1:1070554/140‑1 (MQ=255)

                                                            gaagaaAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACt                                                         <  2:1132038/140‑1 (MQ=255)

                                                            gaagaaAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACt                                                         <  2:43530/140‑1 (MQ=255)

                                                              agaaAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCg                                                       >  2:1431274/1‑140 (MQ=255)

                                                              agaaAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCg                                                       <  1:434120/140‑1 (MQ=255)

                                                                   aCTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGt                                                  <  1:1383473/140‑1 (MQ=255)

                                                                    cTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGccc                                                    <  1:814186/137‑1 (MQ=255)

                                                                    cTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGtt                                                 >  1:852229/1‑140 (MQ=255)

                                                                    cTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGtt                                                 >  1:999597/1‑140 (MQ=255)

                                                                        ctgctTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACt                                             <  1:599287/140‑1 (MQ=255)

                                                                         tgctTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTg                                            >  2:1650064/1‑140 (MQ=255)

                                                                         tgctTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTg                                            >  2:1547389/1‑140 (MQ=255)

                                                                          gctTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGt                                           >  2:1572607/1‑140 (MQ=255)

                                                                             tgatgaCCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTc                                        <  1:345420/140‑1 (MQ=255)

                                                                               atgaCCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCa                                      <  1:1077934/140‑1 (MQ=255)

                                                                                tgaCCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCAc                                     <  1:1572607/140‑1 (MQ=255)

                                                                                      tccggCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTc                                                >  1:1597799/4‑123 (MQ=255)

                                                                                      tCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCa                                      <  2:1654052/133‑1 (MQ=255)

                                                                                      tCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCa                                      >  1:1654052/1‑133 (MQ=255)

                                                                                      tCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCAc                                     <  2:1165158/134‑1 (MQ=255)

                                                                                      tCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCAc                                     >  1:1165158/1‑134 (MQ=255)

                                                                                             gTCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGa                        <  2:502273/140‑1 (MQ=255)

                                                                                              tCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGaa                       >  1:506822/1‑140 (MQ=255)

                                                                                              tCGGTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGaa                       >  1:1412527/1‑140 (MQ=255)

                                                                                                ggTGGCGCGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATa                             >  1:1251402/1‑132 (MQ=255)

                                                                                                    gcgcGTCGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAACGgca                 >  2:551209/1‑140 (MQ=255)

                                                                                                     cgcgTCGATGGGCGCGATGAGGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAACGgcag                <  1:1213497/140‑1 (MQ=255)

                                                                                                        gTCGATGGGCGCAATGACGGCAATGGGGATTACCGCTCGCCTCCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAAc                     <  2:426048/132‑1 (MQ=255)

                                                                                                        gTCGATGGGCGCAATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAAc                     >  1:426048/1‑132 (MQ=255)

                                                                                                          cGATGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAACGGcagcacag           <  1:1547389/140‑1 (MQ=255)

                                                                                                            aTGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAACGGcagcacagca         >  2:1462586/1‑140 (MQ=255)

                                                                                                            aTGGGCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAACGGcagcacagca         >  2:1546622/1‑140 (MQ=255)

                                                                                                              gggCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGTCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAACGGCAGCACAGCAga       <  2:889842/140‑1 (MQ=255)

                                                                                                              gggCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAACGGCAGCACAGCAga       <  1:1462586/140‑1 (MQ=255)

                                                                                                              gggCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAACGGCAGCACAGCAga       <  2:852229/140‑1 (MQ=255)

                                                                                                              gggCGCGATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAACGGCAGCACAGCAga       >  2:74199/1‑140 (MQ=255)

                                                                                                                 cgcgATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGTGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAACGGCAGCACAGCAgaatg    >  2:737867/1‑140 (MQ=255)

                                                                                                                 cgcgATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAACGGCAGCACAGCAgaatg    <  1:264736/140‑1 (MQ=255)

                                                                                                                  gcgATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAACGGCAGCACAGCAgaatga   <  2:1491944/140‑1 (MQ=255)

                                                                                                                   ggATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAACGGCAGCACAGCAgaatgaa  <  2:214747/139‑1 (MQ=255)

                                                                                                                   cgATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAACGGCAGCACAGCAgaatgaa  <  1:833021/140‑1 (MQ=255)

                                                                                                                   cgATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAACGGCAGCACAGCAgaatgaa  <  1:412766/140‑1 (MQ=255)

                                                                                                                   cgATGACGGCAATGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAACGGCAGCACAGCAgaatgaa  <  1:1650064/140‑1 (MQ=255)

TTCTGGCAAATCTTGCTACAAAGTATGCAGGAATTCACTACTTTACGTGCGGCAATAGCCGAAGAAAACTGGCTGCTTGATGACCGTCTGGCAGTCGGTGGCGCGTCGATGGGCGCGATGACGGCACTGGGGATTACCGCTCGCCACCCCACGGTGAGATGTACCGCCAGCATGATGGGATCGGGCTATTTTACATCACTCGCCCGTTCACTGTTTCCACCGCTGATACCTGAAACGGCAGCACAGCAGAATGAA  >  NC_000913/4417189‑4417443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A