Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A39 F60 I1 R1	17	70.9	2401242	98.9%	2374828	138.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,478,193	T→C	C191C (TGT→TGC)	ynbA →	putative inner membrane protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,478,193	0	T	C	100.0%	214.4 / NA	55	C191C (TGT→TGC)	ynbA	putative inner membrane protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (29/26); total (29/26)

TTTGGCAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCGGAGAGAAAAGGGGGTGAGGT  >  NC_000913/1478056‑1478329

tttGGCAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCg                                                                                                                                        >  2:678664/1‑140 (MQ=255)

  tGGCAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGa                                                                                                                                      <  1:499314/140‑1 (MQ=255)

     cAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAgtg                                                                                                                                   >  1:884224/1‑140 (MQ=255)

     cAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAgtg                                                                                                                                   <  1:1156694/140‑1 (MQ=255)

     cAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAgtg                                                                                                                                   <  1:678664/140‑1 (MQ=255)

                    gTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAgcg                                                                                                                    <  1:936841/140‑1 (MQ=255)

                    gTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAgcg                                                                                                                    <  1:426069/140‑1 (MQ=255)

                     ttAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAgcg                                                                                                                    >  2:330128/1‑139 (MQ=255)

                     ttAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAgcg                                                                                                                    <  1:330128/139‑1 (MQ=255)

                                tCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAg                                                                                                                      <  1:591053/126‑1 (MQ=255)

                                tCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAg                                                                                                                      >  2:591053/1‑126 (MQ=255)

                                  tgtgGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGc                                                                                                      >  2:854549/1‑140 (MQ=255)

                                    tgGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAg                                                                                                                      <  2:528590/122‑1 (MQ=255)

                                    tgGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAg                                                                                                                      >  1:528590/1‑122 (MQ=255)

                                    tgGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTg                                                                                                    >  1:752450/1‑140 (MQ=255)

                                               cGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATctct                                                                                         <  1:466058/140‑1 (MQ=255)

                                                 ttGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTgg                                                                                       >  2:1190058/1‑140 (MQ=255)

                                                  tGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGc                                                                                      >  1:281576/1‑140 (MQ=255)

                                                  tGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGc                                                                                      <  1:13710/140‑1 (MQ=255)

                                                       tttATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAacac                                                                                 >  2:39504/1‑140 (MQ=255)

                                                              acaGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCaa                                                                                    <  1:88481/130‑1 (MQ=255)

                                                              acaGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCaa                                                                                    >  2:88481/1‑130 (MQ=255)

                                                               caGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTcgcg                                                                         <  2:396935/140‑1 (MQ=255)

                                                                  tGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCgttg                                                                      >  2:302856/1‑140 (MQ=255)

                                                                    gATGCAGTAGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCgttgtt                                                                    >  2:630612/1‑140 (MQ=255)

                                                                          gTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAAtttt                                                              >  1:906753/1‑140 (MQ=255)

                                                                            ggAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCgttg                                                                      <  1:439857/130‑1 (MQ=255)

                                                                            ggAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCgttg                                                                      >  2:439857/1‑130 (MQ=255)

                                                                              aataatCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCa                                                          >  1:484338/1‑140 (MQ=255)

                                                                              aataatCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCa                                                          >  2:863991/1‑140 (MQ=255)

                                                                               ataatCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCaa                                                         <  2:675160/140‑1 (MQ=255)

                                                                                taatCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAAc                                                        <  2:752450/140‑1 (MQ=255)

                                                                                 aatCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACg                                                       <  1:618464/140‑1 (MQ=255)

                                                                                             aGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGt                                           >  2:597174/1‑140 (MQ=255)

                                                                                               cATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGttt                                         >  2:1001838/1‑140 (MQ=255)

                                                                                               cATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGttt                                         >  2:914736/1‑140 (MQ=255)

                                                                                               cATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGttt                                         >  2:968174/1‑140 (MQ=255)

                                                                                                 ttGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTc                                       <  2:1114935/140‑1 (MQ=255)

                                                                                                    cTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGc                                    >  1:1132865/1‑140 (MQ=255)

                                                                                                               cTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGttt                         >  2:990740/1‑139 (MQ=255)

                                                                                                               cTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTa                         <  1:1027327/140‑1 (MQ=255)

                                                                                                               cTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTa                         >  2:1123550/1‑140 (MQ=255)

                                                                                                               cTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTa                         >  1:1150543/1‑140 (MQ=255)

                                                                                                               cTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTa                         <  1:630612/140‑1 (MQ=255)

                                                                                                               cTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTa                         >  1:266295/1‑140 (MQ=255)

                                                                                                               cTTCTCTGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTa                         >  1:169854/1‑140 (MQ=255)

                                                                                                                     tGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCGgag                   <  2:1132865/140‑1 (MQ=255)

                                                                                                                     tGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCGgag                   <  1:914736/140‑1 (MQ=255)

                                                                                                                     tGGACTGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCGgag                   <  2:864333/140‑1 (MQ=255)

                                                                                                                          tGCGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCGGAGAGaaa              <  1:968174/140‑1 (MQ=255)

                                                                                                                            cGATTAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCGGAGAGAAAAg            >  1:418819/1‑140 (MQ=255)

                                                                                                                                tAATCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCGGAGAGAAAAggggg        <  2:281576/140‑1 (MQ=255)

                                                                                                                                 aaTCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCGGAGAGAAAAGGGGGt       >  2:704562/1‑140 (MQ=255)

                                                                                                                                 aaTCGTTGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCGGAGAGAAAAGGGGGt       <  2:1150543/140‑1 (MQ=255)

                                                                                                                                      ttGCCGGAGTGTTCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCGGAGAGAAAAGGGGGTGAGGt  <  2:484338/140‑1 (MQ=255)

                                                                                                                                      ttGCCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGCTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCGGAGAGAAAAGGGGGTGAGGt  <  1:854549/140‑1 (MQ=255)

TTTGGCAAAAGCGATCGCGCGTTAATATTTGGTCTGTGGGGTCTGGCCGTTGCCATTTATCCACAGTGGATGCAGTGGAATAATCTTTTATGGAGCATTGCTTCAATTCTGCTTCTCTGGACTGCGATTAATCGTTGTCGGAGTGTGCTTCTTATGAGCGCTGAAATATAATGCTGGAAAAATCTCTGGCAACACTTTTCGCGTTGTTAATTTTAGCAACGCTGATAAACCGTTTTCTGCTATGGCGGTTACCGGAGAGAAAAGGGGGTGAGGT  >  NC_000913/1478056‑1478329

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A