Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A17 F60 I1 R1
|
17 |
25.6 |
870458 |
98.8% |
860012 |
138.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
1,429,966 |
Δ84 bp |
coding (918‑1001/3363 nt) |
stfR → |
Rac prophage; putative membrane protein |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
1429966 |
1430049 |
84 |
16 [0] |
[0] 16 |
stfR |
Rac prophage; putative membrane protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 1429965 | 0 (0.000) | 16 (0.670) |
15/258 |
0.5 |
100% |
coding (917/3363 nt) |
stfR |
Rac prophage; putative membrane protein |
| ? | NC_000913 |
1430050 = |
0 (0.000) | coding (1002/3363 nt) |
stfR |
Rac prophage; putative membrane protein |
GATK/CNVnator alignment
N/A
