Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F60 I1 R1 15 71.5 2434152 98.6% 2400073 138.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,162,468 T→G E268A (GAA→GCA)  trmA ← tRNA m(5)U54 methyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,162,4680TG100.0% 226.3 / NA 63E268A (GAA→GCA) trmAtRNA m(5)U54 methyltransferase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (24/39);  total (24/39)

CCATTTTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTTCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCGGTGGCTAATACCCGATCAAAATTACGCGCCAGCGCTAATG  >  NC_000913/4162334‑4162597
                                                                                                                                      |                                                                                                                                 
ccATTTTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTgcc                                                                                                                              <  1:1096458/140‑1 (MQ=255)
    tttCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCa                                                                                                                          <  2:125580/140‑1 (MQ=255)
        tcGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACg                                                                                                                      >  2:1211900/1‑140 (MQ=255)
         cGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGa                                                                                                                     <  2:220995/140‑1 (MQ=255)
                   gTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATACCTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCAACGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTa                                                                                                           <  1:195814/140‑1 (MQ=255)
                   gTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTa                                                                                                           <  2:138208/140‑1 (MQ=255)
                   gTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTa                                                                                                           <  2:423453/140‑1 (MQ=255)
                    tCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTa                                                                                                           <  1:522850/139‑1 (MQ=255)
                    tCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTa                                                                                                           >  2:522850/1‑139 (MQ=255)
                    tCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTAc                                                                                                          >  1:538712/1‑140 (MQ=255)
                     ccAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACg                                                                                                         >  1:1053297/1‑140 (MQ=255)
                     ccAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACg                                                                                                         <  2:496548/140‑1 (MQ=255)
                      cAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCCTTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTTTACGt                                                                                                        >  2:872073/1‑140 (MQ=255)
                      cAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGt                                                                                                        <  2:423629/140‑1 (MQ=255)
                      cAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGt                                                                                                        >  1:423629/1‑140 (MQ=255)
                       aGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGtt                                                                                                       <  1:96027/140‑1 (MQ=255)
                         aCCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGt                                                                                                            <  2:723685/133‑1 (MQ=255)
                         aCCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGt                                                                                                            >  1:723685/1‑133 (MQ=255)
                           cGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCa                                                                                                   <  2:684403/140‑1 (MQ=255)
                             cTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAat                                                                                                 <  1:236801/140‑1 (MQ=255)
                             cTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAat                                                                                                 <  2:631289/140‑1 (MQ=255)
                              tGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCCTTCATCGCCCGGATAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAata                                                                                                >  2:382559/1‑140 (MQ=255)
                              tGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACg                                                                                                         <  2:900086/131‑1 (MQ=255)
                              tGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACg                                                                                                         >  1:900086/1‑131 (MQ=255)
                              tGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGt                                                                                                        >  2:150703/1‑132 (MQ=255)
                              tGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGt                                                                                                        <  1:150703/132‑1 (MQ=255)
                              tGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCa                                                                                                   <  2:661118/137‑1 (MQ=255)
                              tGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCa                                                                                                   >  1:661118/1‑137 (MQ=255)
                              tGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAata                                                                                                >  2:1175862/1‑140 (MQ=255)
                              tGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAata                                                                                                >  1:332979/1‑140 (MQ=255)
                                cgcgGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTTATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATg                                                                                              >  2:649032/1‑140 (MQ=255)
                                cgcgGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATg                                                                                              >  2:689791/1‑140 (MQ=255)
                                        gTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTg                                                                                      <  2:332979/140‑1 (MQ=255)
                                        gTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTg                                                                                      <  2:451645/140‑1 (MQ=255)
                                          cGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCg                                                                                    <  2:538712/140‑1 (MQ=255)
                                                aaaTGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGAtgttg                                                                              <  1:689791/140‑1 (MQ=255)
                                                 aaTGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAAGTCGCGCACACCATTCATCGCCTGAGGAAATTCTGCTTCCGCCATACGAATAATTTGTACGATCTCAATATGGGTTGCTGCGGtgttgt                                                                             >  2:722811/1‑140 (MQ=255)
                                                 aaTGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATTGTTAGCTGCGAtgttgt                                                                             >  2:370813/1‑140 (MQ=255)
                                                   tGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCAAtacaacat                                                                           <  1:649032/140‑8 (MQ=255)
                                                          gCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCgcag                                                                    <  1:419930/140‑1 (MQ=255)
                                                            aCTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCgcagca                                                                  <  2:482002/140‑1 (MQ=255)
                                                             cTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCgcagcag                                                                 <  1:1211900/140‑1 (MQ=255)
                                                                          aaGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGGGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTTTCAATATGGTTAGCTGCGGTGTTGTATTGCGCAGCAGCAACCGACGGCtt                                                    >  2:25478/1‑140 (MQ=255)
                                                                          aaGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCtt                                                    >  2:674680/1‑140 (MQ=255)
                                                                               gATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGa                                               >  1:468936/1‑140 (MQ=255)
                                                                                 tCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGAtt                                             >  2:681002/1‑140 (MQ=255)
                                                                                    cTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCg                                          <  1:1175862/140‑1 (MQ=255)
                                                                                    cTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCg                                          <  2:1055802/140‑1 (MQ=255)
                                                                                    cTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCg                                          <  2:468936/140‑1 (MQ=255)
                                                                                     ttGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCgg                                         <  2:510061/140‑1 (MQ=255)
                                                                                     ttGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCgg                                         <  1:146694/140‑1 (MQ=255)
                                                                                      tGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCGGt                                        <  1:382559/140‑1 (MQ=255)
                                                                                       gCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCgg                                         >  2:466324/1‑138 (MQ=255)
                                                                                       gCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCgg                                         <  1:466324/138‑1 (MQ=255)
                                                                                          ggCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGTTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCGGTGGCt                                    <  1:334211/140‑1 (MQ=255)
                                                                                           gCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTTCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCgg                                         >  2:223078/1‑134 (MQ=255)
                                                                                           gCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCgg                                         <  1:223078/134‑1 (MQ=255)
                                                                                           gCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCGGTGGCTa                                   >  2:399820/1‑140 (MQ=255)
                                                                                              gTTAAAATCGCGCACACCATTCATCGCCTGAGGAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGATTAGCTGCGGTGTTGTATTGCGCAGCAGCAACCCACGGCTTAGCGATTTCGGTGGCTAATa                                >  2:1134072/1‑140 (MQ=255)
                                                                                                  aaCTCGCGCACACCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCGGTGGCTAATACCCg                            <  1:681002/140‑1 (MQ=255)
                                                                                                            cacCATTCATCGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCGGTGGCTAATACCCGATCAAAATTa                  <  1:674680/140‑1 (MQ=255)
                                                                                                                      ggcttGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCGGTGGCTAATACCCGATCAAAATTACGCGCCAgcg        <  2:481843/136‑1 (MQ=255)
                                                                                                                      cGCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCGGTGGCTAATACCCGATCAAAATTACGCGCCAgcg        >  1:988981/1‑140 (MQ=255)
                                                                                                                       gCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCGGTGGCTAATACCCGATCAAAATTACGCGCCAgcgc       >  1:236408/1‑140 (MQ=255)
                                                                                                                       gCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCGGTGGCTAATACCCGATCAAAATTACGCGCCAgcgc       <  1:399820/140‑1 (MQ=255)
                                                                                                                       gCCTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCGGTGGCTAATACCCGATCAAAATTACGCGCCAgcgc       >  1:631537/1‑140 (MQ=255)
                                                                                                                         cTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCGGTGGCTAATACCCGATCAAAATTa                  >  2:49202/1‑127 (MQ=255)
                                                                                                                         cTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCGGTGGCTAATACCCGATCAAAATTa                  <  1:49202/127‑1 (MQ=255)
                                                                                                                         cTGAGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCGGTGGCTAATACCCGATCAAAATTACGCGCCAGCGCTa     >  1:224059/1‑140 (MQ=255)
                                                                                                                            aGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCGGTGGCTAATACCCGATCAAAATTACGCGCCAGCGCTAATg  <  2:224059/140‑1 (MQ=255)
                                                                                                                            aGTAAATTCTGCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCGGTGGCTAATACCCGATCAAAATTACGCGCCAGCGCTAATg  >  2:664696/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                 
CCATTTTCTCGGTTTCACTGTCCAGACCGCTGCGCGGAGGGTCGACAAAAATGGTTTCGCACTGATAACTCTTTAAGTCGATCCCTTGCAGGCGGTTAAACTCGCGCACACCATTCATCGCCTGAGTAAATTCTTCTGCCGCCATACGAATAATTTGTACGTTATCAATATGGTTAGCTGCGATGTTGTATTGCGCAGCAGCAACCGACGGCTTAGCGATTTCGGTGGCTAATACCCGATCAAAATTACGCGCCAGCGCTAATG  >  NC_000913/4162334‑4162597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A