Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F60 I1 R1	15	71.5	2434152	98.6%	2400073	138.2

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,596,974	A→C	N329H (AAC→CAC)	lgoD →	L‑galactonate oxidoreductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,596,974	0	A	C	100.0%	294.1 / NA	76	N329H (AAC→CAC)	lgoD	L‑galactonate oxidoreductase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (32/44); total (32/44)

CAGCCGCAACGCCACGCCGGAAGATTTTGCTAAAGTCGGTCGACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAG  >  NC_000913/4596838‑4597106

cAGCCGCAACGCCACGCCGGAAGATTTTGCTAAAGTCGGTCGACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTcaca                                                                                                                                   <  1:583499/140‑1 (MQ=255)

   ccGCAACGCCACGCCGGAAGATTTTGCTAAAGTCGGTCGACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATc                                                                                                                                >  1:445280/1‑140 (MQ=255)

   ccGCAACGCCACGCCGGAAGATTTTGCTAAAGTCGGTCGACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATc                                                                                                                                >  1:659373/1‑140 (MQ=255)

   ccGCAACGCCACGCAGGAAGATTTTGCTAAAGTCGGTCGACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATc                                                                                                                                >  1:783449/1‑140 (MQ=255)

    cGCAACGCCACGCCGGAAGATTTTGCTAAAGTCGGTCGACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCg                                                                                                                               <  1:824944/140‑1 (MQ=255)

     gCAACGCCACGCCGGAAGATTTTGCTAAAGTCGGTCGACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGt                                                                                                                              <  1:1193784/140‑1 (MQ=255)

              cgccGGAAGATTTTGCTAAAGTCGGTCGACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGttaatt                                                                                                                     >  2:1113425/1‑140 (MQ=255)

              cgccGGAAGATTTTGCTAAAGTCGGTCGACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCAACGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAACGCGATGTGATTCACAATCGTGAGttaatt                                                                                                                     >  1:897508/1‑140 (MQ=255)

                 cGGAAGATTTTGCTAAAGTCGGTCGACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTaaa                                                                                                                  >  2:1122763/1‑140 (MQ=255)

                 cGGAAGATTTTGCTAAAGTCGGTCGACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTaaa                                                                                                                  <  2:1001368/140‑1 (MQ=255)

                 cGGAAGATTTTGCTAAAGTCGGTCGACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTaaa                                                                                                                  <  2:586325/140‑1 (MQ=255)

                 cGGAAGATTTTGCTAAAGTCGGTCGACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTaaa                                                                                                                  <  2:897508/140‑1 (MQ=255)

                   gAAGATTTTGCTAAAGTCGGTCGACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAgg                                                                                                                <  1:809028/140‑1 (MQ=255)

                         tttGCTAAAGTCGGTCGACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAAt                                                                                                          <  1:146388/140‑1 (MQ=255)

                         tttGCTAAAGTCGGTCGACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAAt                                                                                                          <  2:661746/140‑1 (MQ=255)

                         tttGCTAAAGTCGGTCGACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAAt                                                                                                          <  1:427815/140‑1 (MQ=255)

                            gCTAAAGTCGGTCGACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTAc                                                                                                       <  2:622268/140‑1 (MQ=255)

                               aaaGTCGGTCGACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACttt                                                                                                    <  2:445280/140‑1 (MQ=255)

                                  gtcggtcgACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTg                                                                                                 >  2:970495/1‑140 (MQ=255)

                                    cggtcgACTGATGGCGGAAGGAAAAATCACTGCTGGCATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGAt                                                                                               <  2:1054145/140‑1 (MQ=255)

                                    cggtcgACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGAt                                                                                               <  1:566003/140‑1 (MQ=255)

                                    cggtcgACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGAt                                                                                               <  2:398077/140‑1 (MQ=255)

                                     ggtcgACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATa                                                                                              >  2:1088540/1‑140 (MQ=255)

                                        cgACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAgg                                                                                           <  2:482537/140‑1 (MQ=255)

                                        cgACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAgg                                                                                           <  1:467022/140‑1 (MQ=255)

                                           cTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCga                                                                                        <  1:1113425/140‑1 (MQ=255)

                                            tGATGGCGGAAGGAAAAATCACTGCTGACAGGGTGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTTTGATAAGGCgag                                                                                       >  2:446403/1‑140 (MQ=255)

                                              aTGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGc                                                                                          <  2:1181206/135‑1 (MQ=255)

                                              aTGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGc                                                                                          >  1:1181206/1‑135 (MQ=255)

                                              aTGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGat                                                                                     <  1:463744/140‑1 (MQ=255)

                                                      aggaaAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAg                                                                             <  2:659373/140‑1 (MQ=255)

                                                      aggaaAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAg                                                                             <  1:641842/140‑1 (MQ=255)

                                                                 ctgctgACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAg                                                                  >  1:335491/1‑140 (MQ=255)

                                                                  tgctgACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGc                                                                 <  1:714124/140‑1 (MQ=255)

                                                                         atgatgTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTT‑ATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGTCATGCAGCGTCTgggg                                                         <  2:783449/140‑1 (MQ=255)

                                                                              gTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgt                                                     >  2:263278/1‑140 (MQ=255)

                                                                                     cATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGgc                                              >  2:231665/1‑140 (MQ=255)

                                                                                       tCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGgcgc                                            <  2:335491/140‑1 (MQ=255)

                                                                                       tCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGgcgc                                            <  1:270351/140‑1 (MQ=255)

                                                                                       tCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGgcgc                                            >  2:809944/1‑140 (MQ=255)

                                                                                       tCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGgcgc                                            >  2:1170145/1‑140 (MQ=255)

                                                                                       tCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGgagc                                            >  1:566286/1‑140 (MQ=255)

                                                                                        cGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCg                                                            <  2:195478/123‑1 (MQ=255)

                                                                                        cGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCg                                                            >  1:195478/1‑123 (MQ=255)

                                                                                              ccGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt                                                  >  2:16031/1‑127 (MQ=255)

                                                                                              ccGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt                                                  <  1:16031/127‑1 (MQ=255)

                                                                                                  tCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCTATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTg                                 >  1:933049/1‑140 (MQ=255)

                                                                                                  tCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTg                                 >  1:936497/1‑140 (MQ=255)

                                                                                                  tCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTg                                 <  1:1170145/140‑1 (MQ=255)

                                                                                                  tCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTg                                 >  1:554717/1‑140 (MQ=255)

                                                                                                    gCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGtt                               <  1:809944/140‑1 (MQ=255)

                                                                                                       aCGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCt                            >  1:230022/1‑140 (MQ=255)

                                                                                                       aCGCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCt                            >  1:649362/1‑140 (MQ=255)

                                                                                                         gCTGGCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTta                          >  1:55937/1‑140 (MQ=255)

                                                                                                            ggCAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTtaata                       <  1:231665/140‑1 (MQ=255)

                                                                                                              cAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTaataat                     <  2:230022/140‑1 (MQ=255)

                                                                                                              cAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTaataat                     <  1:263278/140‑1 (MQ=255)

                                                                                                              cAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTaataat                     <  2:649362/140‑1 (MQ=255)

                                                                                                              cAGAAACCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTaataat                     <  1:399121/140‑1 (MQ=255)

                                                                                                                   aCCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGtt                               <  1:919085/125‑1 (MQ=255)

                                                                                                                   aCCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGtt                               >  2:919085/1‑125 (MQ=255)

                                                                                                                   aCCTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGtgtt                >  2:348705/1‑140 (MQ=255)

                                                                                                                     cTACGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGtgttgt              <  1:1088540/140‑1 (MQ=255)

                                                                                                                       aCGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGttt                              <  2:437869/122‑1 (MQ=255)

                                                                                                                       aCGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGttt                              >  1:437869/1‑122 (MQ=255)

                                                                                                                       aCGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGtgttgt              >  1:659690/1‑138 (MQ=255)

                                                                                                                       aCGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGtgttgt              <  2:659690/138‑1 (MQ=255)

                                                                                                                       aCGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTaa            >  2:22007/1‑140 (MQ=255)

                                                                                                                        cGAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAg           <  1:1122763/140‑1 (MQ=255)

                                                                                                                         gAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGc          <  1:348705/140‑1 (MQ=255)

                                                                                                                         gAGCGCGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGc          <  1:588517/140‑1 (MQ=255)

                                                                                                                           gcgcGATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCg        >  2:632538/1‑140 (MQ=255)

                                                                                                                            cgcgATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCTATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGt       <  2:933049/140‑1 (MQ=255)

                                                                                                                            cgcgATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGt       <  2:554717/140‑1 (MQ=255)

                                                                                                                             gcgATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTa      >  2:580908/1‑140 (MQ=255)

                                                                                                                              cgATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAg     >  1:447414/1‑140 (MQ=255)

                                                                                                                              cgATGTGATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAg     <  1:446403/140‑1 (MQ=255)

                                                                                                                                 tgtgATTCACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAg  >  1:41419/1‑140 (MQ=255)

CAGCCGCAACGCCACGCCGGAAGATTTTGCTAAAGTCGGTCGACTGATGGCGGAAGGAAAAATCACTGCTGACATGATGTTAACCCATCGCTATCCGTTCGCCACGCTGGCAGAAACCTACGAGCGCGATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCGCTGTTTTTTTTGTTTCTTAATAATGTGTTGTAAGCCGTAGAAG  >  NC_000913/4596838‑4597106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A