Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F60 I1 R1	26	145.4	4915572	98.9%	4861500	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,572,229	G→T	intergenic (‑184/+178)	gadB ← / ← pqqL	glutamate decarboxylase B/putative zinc peptidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,572,229	0	G	T	100.0%	474.6 / NA	133	intergenic (‑184/+178)	gadB/pqqL	glutamate decarboxylase B/putative zinc peptidase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (70/63); total (70/63)

Only 100 of 136 total aligned reads displayed.

ATCGATAAAGTAAGCAAGTGCAAAGGACTCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTGTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATAAAATTATTACATAAAAATAG  >  NC_000913/1572092‑1572359

aTCGATAAAGTAAGCAAGTGCAAAGGACTCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGtttt                                                                                                                                  >  2:155234/1‑140 (MQ=255)

  cGATAAAGTAAGCAAGAGCAAAGGAATCGTGTTTAAATACCAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGtttttt                                                                                                                                >  2:1844360/1‑140 (MQ=255)

      aaaGTAAGCAAGTGCAAAGGACTCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGc                                                                                                                            <  1:145168/140‑1 (MQ=255)

        aGTAAGCAAGTGCAAAGGACTCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTg                                                                                                                          <  2:711844/140‑1 (MQ=255)

        aGTAAGCAAGTGCAAAGGACTCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTg                                                                                                                          <  2:157882/140‑1 (MQ=255)

           aaGCAAGTGCAAAGGACTCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTa                                                                                                                       <  1:88651/140‑1 (MQ=255)

               aaGTGCAAAGGACTCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTAtttt                                                                                                                   <  2:1497596/140‑1 (MQ=255)

                 gTGCAAAGGACTCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTa                                                                                                                 >  2:2426030/1‑140 (MQ=255)

                  tGCAAAGGACTCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTa                                                                                                                               >  1:1053818/1‑125 (MQ=255)

                  tGCAAAGGACTCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTAt                                                                                                                >  1:1538128/1‑140 (MQ=255)

                  tGCAAAGGACTCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTAt                                                                                                                >  1:1222472/1‑140 (MQ=255)

                  tGCAAAGGACTCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTAt                                                                                                                >  2:660965/1‑140 (MQ=255)

                   gCAAAGGACTCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATg                                                                                                               <  2:410819/140‑1 (MQ=255)

                   gCAAAGGACTCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATg                                                                                                               <  1:1580430/140‑1 (MQ=255)

                     aaaGGACTCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATgcg                                                                                                             <  2:1236689/140‑1 (MQ=255)

                      aaGGACTCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATgcgc                                                                                                            <  1:2353145/140‑1 (MQ=255)

                       aGGACTCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCa                                                                                                           >  1:1974962/1‑140 (MQ=255)

                           cTCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCt                                                                                                       >  2:1320150/1‑140 (MQ=255)

                           cTCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCt                                                                                                       >  2:670703/1‑140 (MQ=255)

                            tCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATg                                                                                                               >  1:1424274/1‑131 (MQ=255)

                            tCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATg                                                                                                               <  2:1424274/131‑1 (MQ=255)

                            tCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCtg                                                                                                      >  2:2161824/1‑140 (MQ=255)

                             cGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCtgt                                                                                                     <  2:2178316/140‑1 (MQ=255)

                              gtgtTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCtgtg                                                                                                    >  2:1233838/1‑140 (MQ=255)

                                      aTAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGa                                                                                            >  1:1406599/1‑140 (MQ=255)

                                          cAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTa                                                                                        >  2:1961610/1‑140 (MQ=255)

                                            aaaTCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATc                                                                                      <  1:721797/140‑1 (MQ=255)

                                                  tAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTaa                                                                                <  1:2161824/140‑1 (MQ=255)

                                                    aTGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTaaaa                                                                              >  1:1200408/1‑140 (MQ=255)

                                                    aTGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTaaaa                                                                              >  1:2315468/1‑140 (MQ=255)

                                                     tGTTATTTATCGAGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTaaaaa                                                                             >  1:976222/1‑140 (MQ=255)

                                                      gTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAAt                                                                            <  1:1320150/140‑1 (MQ=255)

                                                        tatttatCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCa                                                                          <  1:2426030/140‑1 (MQ=255)

                                                        tatttatCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCa                                                                          <  2:976222/140‑1 (MQ=255)

                                                        tatttatCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCa                                                                          <  2:1831205/140‑1 (MQ=255)

                                                         atttatCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAg                                                                         >  1:1903088/1‑140 (MQ=255)

                                                         atttatCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAg                                                                         >  1:1624921/1‑140 (MQ=255)

                                                          tttatCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGa                                                                        >  1:160390/1‑140 (MQ=255)

                                                          tttatCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGa                                                                        >  2:898843/1‑140 (MQ=255)

                                                            tatCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCa                                                                          <  1:542576/136‑1 (MQ=255)

                                                            tatCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCa                                                                          >  2:542576/1‑136 (MQ=255)

                                                             atCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCt                                                                     <  1:660965/140‑1 (MQ=255)

                                                              tCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCtt                                                                    <  1:448738/140‑1 (MQ=255)

                                                               cGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTa                                                                   >  2:755645/1‑140 (MQ=255)

                                                                 tGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTaaa                                                                 >  2:515063/1‑140 (MQ=255)

                                                                 tGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTaaa                                                                 >  1:771145/1‑140 (MQ=255)

                                                                   agaTATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAat                                                               <  1:1287868/140‑1 (MQ=255)

                                                                   agaTATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAat                                                               >  1:1218223/1‑140 (MQ=255)

                                                                   agaTATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAat                                                               <  2:21918/140‑1 (MQ=255)

                                                                     atatTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAatat                                                             >  1:944922/1‑140 (MQ=255)

                                                                      tatTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATc                                                            <  1:1647426/140‑1 (MQ=255)

                                                                        ttACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAatat                                                             <  1:95741/137‑1 (MQ=255)

                                                                        ttACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCAc                                                          >  2:82411/1‑140 (MQ=255)

                                                                        ttACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCAc                                                          >  2:224415/1‑140 (MQ=255)

                                                                           cgcgAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTAt                                                       <  2:2315468/140‑1 (MQ=255)

                                                                           cgcgAATAATATTTTTTAATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTAt                                                       <  1:243001/140‑1 (MQ=255)

                                                                            gcgAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTAtt                                                      <  2:1305632/140‑1 (MQ=255)

                                                                              gAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAg                                                    >  1:1782706/1‑140 (MQ=255)

                                                                              gAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAg                                                    <  2:1730950/140‑1 (MQ=255)

                                                                               aataatATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGt                                                   >  1:1750250/1‑140 (MQ=255)

                                                                               aataatATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGt                                                   >  1:694432/1‑140 (MQ=255)

                                                                                ataataTTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTaaa                                                                 <  1:1161844/125‑1 (MQ=255)

                                                                                ataataTTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTaaa                                                                 >  2:1161844/1‑125 (MQ=255)

                                                                                ataataTTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTa                                                  >  2:2427254/1‑140 (MQ=255)

                                                                                ataataTTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTa                                                  <  1:825194/140‑1 (MQ=255)

                                                                                  aataTTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATc                                                            <  1:2365659/128‑1 (MQ=255)

                                                                                  aataTTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATc                                                            >  2:2365659/1‑128 (MQ=255)

                                                                                   atatTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACtt                                               <  1:515063/140‑1 (MQ=255)

                                                                                     atTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGa                                             <  2:1469978/140‑1 (MQ=255)

                                                                                     atTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGa                                             <  1:82411/140‑1 (MQ=255)

                                                                                              ttGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTAttt                                    >  2:1393922/1‑140 (MQ=255)

                                                                                               tGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTAtttt                                   >  1:935073/1‑140 (MQ=255)

                                                                                                  aaaaCAATACAATATGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGaa                                <  2:1406599/140‑1 (MQ=255)

                                                                                                  aaaaCAAATCAATATGAAAGTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGaa                                <  1:1844360/140‑1 (MQ=255)

                                                                                                         tacaataTGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAGAATATCACTATTAGTACTTGATTATTATTTTGAACGCAttt                         >  1:766363/1‑140 (MQ=255)

                                                                                                         tacaataTGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCAttt                         >  1:52983/1‑140 (MQ=255)

                                                                                                         tacaataTGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCAttt                         >  1:22140/1‑140 (MQ=255)

                                                                                                            aataTGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTtata                      <  2:1699594/140‑1 (MQ=255)

                                                                                                              tatGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATaaa                    >  2:247951/1‑140 (MQ=255)

                                                                                                              tatGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATaaa                    >  1:1079975/1‑140 (MQ=255)

                                                                                                               atGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATaaaa                   <  2:1637773/140‑1 (MQ=255)

                                                                                                                tGAAATTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATAAAat                  >  1:1674553/1‑140 (MQ=255)

                                                                                                                   aaTTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATAAAattat               <  2:1872128/140‑1 (MQ=255)

                                                                                                                   aaTTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATAAAattat               <  2:96298/140‑1 (MQ=255)

                                                                                                                   aaTTCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATAAAattat               <  2:699579/140‑1 (MQ=255)

                                                                                                                     ttCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATAAAAttatta             >  2:340468/1‑140 (MQ=255)

                                                                                                                     ttCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATAAAAttatta             >  2:679596/1‑140 (MQ=255)

                                                                                                                      tCTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATAAAATTATTAc            >  2:1675039/1‑140 (MQ=255)

                                                                                                                       cTTGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATAAAATTATTACa           >  2:1426527/1‑140 (MQ=255)

                                                                                                                        ttGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATAAAATTATTACAt          >  2:1145707/1‑140 (MQ=255)

                                                                                                                        ttGGGTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATAAAATTATTACAt          <  2:1928841/140‑1 (MQ=255)

                                                                                                                          gggTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATAAAattat               <  2:440213/133‑1 (MQ=255)

                                                                                                                          gggTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATAAAattat               >  1:440213/1‑133 (MQ=255)

                                                                                                                          gggTGGTGGTAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATAAAATTATTACATaa        >  2:1014118/1‑140 (MQ=255)

                                                                                                                            gtggtggtAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATAAAATTATTACATaaaa      <  2:1109363/140‑1 (MQ=255)

                                                                                                                            gtggtggtAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATAAAATTATTACATaaaa      <  2:832155/140‑1 (MQ=255)

                                                                                                                            gtggtggtAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATAAAATTATTACATaaaa      <  2:1218223/140‑1 (MQ=255)

                                                                                                                             tggtggtAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATAAAATTATTACATaaaaa     >  1:2275889/1‑140 (MQ=255)

                                                                                                                               gtggtAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATAAAATTATTACATAAAAATa   >  1:1429479/1‑140 (MQ=255)

                                                                                                                                tggtAAGGTTTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATAAAATTATTACATAAAAATAg  >  1:1529880/1‑140 (MQ=255)

ATCGATAAAGTAAGCAAGTGCAAAGGACTCGTGTTTAAATAACAAAATCCTAATGTTATTTATCGTGAGATATTACGCGAATAATATTTTTTCATTGAAAAACAATACAATATGAAATTCTTGGGTGGTGGTAAGGTGTTTTATGCTGTTATTTTTATGCGCATTCTGTGTCTCCTGAATTATCACGTAAAAATCAGACCTTAAAATATCACTATTAGTACTTGATTATTATTTTGAACGCATTTATAAAATTATTACATAAAAATAG  >  NC_000913/1572092‑1572359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A