Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F60 I1 R1 20 85.9 2954762 98.8% 2919304 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,403,484 A→C V361G (GTC→GGC)  abgA ← p‑aminobenzoyl‑glutamate hydrolase subunit A

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,403,4840AC98.4% 238.7 / ‑4.2 64V361G (GTC→GGC) abgAp‑aminobenzoyl‑glutamate hydrolase subunit A
Reads supporting (aligned to +/- strand):  ref base A (1/0);  new base C (34/29);  total (35/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.68e-01

CGTTGTGATGACCTGCCGCCAGCTGTGTGCCAAACACCACGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGCCGACACCATACATGGTTGCTGCGCCCTGAATCGCTTG  >  NC_000913/1403347‑1403617
                                                                                                                                         |                                                                                                                                     
cGTTGTGATGACCTGCCGCCAGCTGTGTGCCAAACACCACGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGccc                                                                                                                                     <  1:311048/140‑1 (MQ=255)
     tgatgaCCTGCCGCCAGCTGTGTGCCAAACACCACGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCcgc                                                                                                                                <  2:472321/140‑1 (MQ=255)
               ccgccAGCTGTGTGCCAAACACCACGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGcccccc                                                                                                                                  <  2:573075/128‑1 (MQ=255)
               ccgccAGCTGTGTGCCAAACACCACGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGcccccc                                                                                                                                  >  1:573075/1‑128 (MQ=255)
               ccgccAGCTGTGTGCCAAACACCACGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAgcc                                                                                                                      >  2:1472905/1‑140 (MQ=255)
               ccgccAGCTGTGTGCCAAACACCACGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAgcc                                                                                                                      >  2:671970/1‑140 (MQ=255)
                 gccAGCTGTGTGCCAAACACCACGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAgccgc                                                                                                                    >  2:339776/1‑140 (MQ=255)
                   cAGCTGTGTGCCAAACACCACGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCt                                                                                                                  <  2:1456480/140‑1 (MQ=255)
                           tgCCAAACACCACGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGc                                                                                                          <  1:339776/140‑1 (MQ=255)
                            gCCAAACACCACGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCa                                                                                                         >  1:479396/1‑140 (MQ=255)
                                    ccacGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCg                                                                                                 <  2:1339948/140‑1 (MQ=255)
                                     cacGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCt                                                                                                                  >  1:883598/1‑122 (MQ=255)
                                     cacGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCt                                                                                                                  <  2:883598/122‑1 (MQ=255)
                                       cGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGc                                                                                                          >  1:1250127/1‑128 (MQ=255)
                                       cGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGc                                                                                                          <  2:1250127/128‑1 (MQ=255)
                                          aggaggCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCAt                                                                                           >  1:182839/1‑140 (MQ=255)
                                               gCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTgcgg                                                                                      >  2:557859/1‑140 (MQ=255)
                                                   gCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGaa                                                                                  >  1:1134357/1‑140 (MQ=255)
                                                      cTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGACGAAGga                                                                               >  1:556559/1‑140 (MQ=255)
                                                           tGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACt                                                                          >  2:1107257/1‑140 (MQ=255)
                                                              tgctgcACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGc                                                                       >  1:120676/1‑140 (MQ=255)
                                                              tgctgcACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGACGAAGGAGAACTGGc                                                                       <  2:556559/140‑1 (MQ=255)
                                                               gctgcACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCg                                                                      >  1:773349/1‑140 (MQ=255)
                                                               gctgcACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCg                                                                      >  1:265037/1‑140 (MQ=255)
                                                               gctgcACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCg                                                                      >  2:1053174/1‑140 (MQ=255)
                                                                   cACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCTTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAg                                                                  <  1:996799/140‑1 (MQ=255)
                                                                   cACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGaa                                                                            >  1:63439/1‑130 (MQ=255)
                                                                   cACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGaa                                                                            <  2:63439/130‑1 (MQ=255)
                                                                   cACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAg                                                                  >  2:437210/1‑140 (MQ=255)
                                                                     cgcgGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCt                                                                >  2:1011726/1‑140 (MQ=255)
                                                                      gcgGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTg                                                               <  2:759717/140‑1 (MQ=255)
                                                                        gggCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCa                                                             <  1:671970/140‑1 (MQ=255)
                                                                        gggCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCa                                                             <  1:1472905/140‑1 (MQ=255)
                                                                        aggCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCa                                                             <  1:642483/139‑1 (MQ=255)
                                                                                   aaTGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACg                                                  <  2:1134357/140‑1 (MQ=255)
                                                                                    aTGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCTCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGa                                                 >  1:329483/1‑140 (MQ=255)
                                                                                    aTGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACgg                                                 >  1:395011/1‑139 (MQ=255)
                                                                                    aTGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGa                                                 >  1:1313471/1‑140 (MQ=255)
                                                                                        ggCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGttt                                             >  2:35719/1‑140 (MQ=255)
                                                                                        ggCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGttt                                             >  2:1003431/1‑140 (MQ=255)
                                                                                         gCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTc                                            >  1:914450/1‑140 (MQ=255)
                                                                                         gCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTc                                            >  1:1418178/1‑140 (MQ=255)
                                                                                         gCATCTTCGGAACCCGCAGGCGCTTCA‑‑ACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCaa                                          >  2:867065/1‑140 (MQ=255)
                                                                                          cATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCa                                           >  2:20633/1‑140 (MQ=255)
                                                                                          cATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCa                                           >  2:886264/1‑140 (MQ=255)
                                                                                          cATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCa                                           >  1:103847/1‑140 (MQ=255)
                                                                                               tCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGcc                                      <  1:886264/140‑1 (MQ=255)
                                                                                               tCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGcc                                      <  2:57187/140‑1 (MQ=255)
                                                                                               tCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGcc                                      >  1:136316/1‑140 (MQ=255)
                                                                                                 ggAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGCCGa                                    <  2:265037/140‑1 (MQ=255)
                                                                                                 ggAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGCCGa                                    <  2:914450/140‑1 (MQ=255)
                                                                                                 ggAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGCCGa                                    <  1:35719/140‑1 (MQ=255)
                                                                                                  gAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGCCGac                                   <  1:1107257/140‑1 (MQ=255)
                                                                                                   aaCCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGCCGaca                                  <  2:136316/140‑1 (MQ=255)
                                                                                                   aaCCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGCCGaca                                  <  2:1080708/140‑1 (MQ=255)
                                                                                                   aaCCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGCCGaca                                  <  1:437210/140‑1 (MQ=255)
                                                                                                      ccGCAGGCGCTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGCCGACACCa                               <  2:1418178/140‑1 (MQ=255)
                                                                                                             cgcTTCAACACGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGCCGACACCATACATgg                        >  1:1326643/1‑140 (MQ=255)
                                                                                                                     cacGTTCAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGCCGACACCATACATGGTTGCTgcg                <  2:182839/140‑1 (MQ=255)
                                                                                                                           cAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGCCGACACCATACATGGTTGCTGCGCCCTGa          <  1:1053174/140‑1 (MQ=255)
                                                                                                                           cAATGGCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGCCGACACCATACATGGTTGCTGCGCCCTGa          <  1:1003431/140‑1 (MQ=255)
                                                                                                                               ggCCTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGCCGACACCATACATGGTTGCTGCGCCCTGAATCg      <  2:1326643/140‑1 (MQ=255)
                                                                                                                                  cTGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGCCGACACCATACATGGTTGCTGCGCCCTGAATCGCtt   >  1:961683/1‑140 (MQ=255)
                                                                                                                                   tGATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGCCGACACCATACATGGTTGCTGCGCCCTGAATCGCttg  >  1:1295405/1‑140 (MQ=255)
                                                                                                                                   tGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGCCGACACCATACATGGTTGCTGCGCCCTGAATCGCttg  >  1:1418413/1‑140 (MQ=255)
                                                                                                                                    gATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGCCGACACCATACATGGTTGCTGCGCCCt            >  2:1146857/1‑129 (MQ=255)
                                                                                                                                    gATTGCCCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGCCGACACCATACATGGTTGCTGCGCCCt            <  1:1146857/129‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                     
CGTTGTGATGACCTGCCGCCAGCTGTGTGCCAAACACCACGTAGGAGGCTTGCCCTTGATGTTGCTGCACGCGGGCCATCATTAATGTGGCATCTTCGGAACCCGCAGGCGCTTCAACACGTTCAATGGCCTGATTGACCCCCGCGACCTGAGCCGCCTGACTTTGCAACCATGCGACCCATTGCGGCGAAGGAGAACTGGCGGTAGCTGCACCCATCAGACGAGTTTCAACGCCGACACCATACATGGTTGCTGCGCCCTGAATCGCTTG  >  NC_000913/1403347‑1403617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A