Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A40 F60 I1 R1	23	105.9	3634506	98.9%	3594526	138.7

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	923,811	G→A	G183D (GGC→GAC)	clpA →	ATP‑dependent Clp protease ATP‑binding subunit ClpA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	923,811	0	G	A	100.0%	292.1 / NA	83	G183D (GGC→GAC)	clpA	ATP‑dependent Clp protease ATP‑binding subunit ClpA
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (42/41); total (42/41)

CTCATGGCACGCGTAAAGACGAGCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGGCGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGGTGTCGGTAAAACCGCGATTGCGGAAGGT  >  NC_000913/923679‑923941

ctcATGGCACGCGTAAAGACGAGCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATc                                                                                                                             >  2:956453/1‑140 (MQ=255)

  cATGGCACGCGTAAAGACGAGCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGa                                                                                                                           >  2:540658/1‑140 (MQ=255)

  cATGGCACGCGTAAAGACGAGCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGa                                                                                                                           >  1:1386632/1‑140 (MQ=255)

   aTGGCACGCGTAAAGACGAGCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGAc                                                                                                                          >  1:1615721/1‑140 (MQ=255)

    tGGCACGCGTAAAGACGAGCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGAcc                                                                                                                         <  2:1615721/140‑1 (MQ=255)

    tGGCACGCGTAAAGACGAGCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGAcc                                                                                                                         <  1:1428118/140‑1 (MQ=255)

    tGGCACGCGTAAAGACGAGCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGAcc                                                                                                                         <  2:557034/140‑1 (MQ=255)

     ggCACGCGTAAAGACGAGCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGAccc                                                                                                                        >  2:328664/1‑140 (MQ=255)

      gCACGCGTAAAGACGAGCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCa                                                                                                                       <  2:1208841/140‑1 (MQ=255)

           cgTAAAGACGAGCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAATAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGAt                                                                                                                  >  2:1559517/1‑140 (MQ=255)

           cgTAAAGACGAGCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGAt                                                                                                                  >  2:383953/1‑140 (MQ=255)

           cgTAAAGACGAGCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGAt                                                                                                                  >  2:1548131/1‑140 (MQ=255)

           cgTAAAGACGAGCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGAt                                                                                                                  <  1:328664/140‑1 (MQ=255)

           cgTAAAGACGAGCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGAt                                                                                                                  <  1:1795995/140‑1 (MQ=255)

           cgTAAAGACGAGCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGAt                                                                                                                  >  2:954444/1‑140 (MQ=255)

           cgTAAAGACGAGCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGAt                                                                                                                  <  1:1210002/140‑1 (MQ=255)

             tAAAGACGAGCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTg                                                                                                                <  1:1548131/140‑1 (MQ=255)

              aaaGACGAGCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTgg                                                                                                               <  1:237684/140‑1 (MQ=255)

                      gCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTgaga                                                                                                       >  2:574076/1‑140 (MQ=255)

                      gCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTgaga                                                                                                       <  2:394193/140‑1 (MQ=255)

                                tcttctGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGa                                                                                             <  1:956453/140‑1 (MQ=255)

                                tcttctGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGa                                                                                             <  2:1780910/140‑1 (MQ=255)

                                   tctGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCg                                                                                          <  1:1578811/140‑1 (MQ=255)

                                   tctGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCg                                                                                          >  2:1793379/1‑140 (MQ=255)

                                   tctGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCg                                                                                          <  1:44157/140‑1 (MQ=255)

                                   tctGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCg                                                                                          <  1:1212659/140‑1 (MQ=255)

                                     tGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTgaga                                                                                                       <  1:1559382/125‑1 (MQ=255)

                                     tGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTgaga                                                                                                       >  2:1559382/1‑125 (MQ=255)

                                     tGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGa                                                                                             <  2:1742239/135‑1 (MQ=255)

                                     tGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGa                                                                                             >  1:1742239/1‑135 (MQ=255)

                                       aTCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCt                                                                                      >  1:543487/1‑140 (MQ=255)

                                       aTCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCt                                                                                      >  1:848805/1‑140 (MQ=255)

                                        tCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTgaga                                                                                                       >  2:646488/1‑122 (MQ=255)

                                        tCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTgaga                                                                                                       <  1:646488/122‑1 (MQ=255)

                                          cTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTAtt                                                                                   >  2:395725/1‑140 (MQ=255)

                                           tGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTc                                                                                  <  1:826801/140‑1 (MQ=255)

                                           tGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTc                                                                                  >  2:462063/1‑140 (MQ=255)

                                            ggCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCa                                                                                 >  2:1442427/1‑140 (MQ=255)

                                            ggCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCa                                                                                 >  1:459682/1‑140 (MQ=255)

                                                         aCAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGt                                                                    >  2:1135704/1‑140 (MQ=255)

                                                         aCAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGt                                                                    >  2:1513895/1‑140 (MQ=255)

                                                          cAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTc                                                                   <  1:574076/140‑1 (MQ=255)

                                                              gaagaaCAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCg                                                               <  1:383953/140‑1 (MQ=255)

                                                                agaaCAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTa                                                             >  1:1128246/1‑140 (MQ=255)

                                                                       gCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAaacaa                                                      >  2:668480/1‑140 (MQ=255)

                                                                        cTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAaacaac                                                     <  2:1386632/140‑1 (MQ=255)

                                                                         tggtggGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAAcc                                                    <  1:526923/140‑1 (MQ=255)

                                                                              gggAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCgctg                                               <  1:1135704/140‑1 (MQ=255)

                                                                              gggAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCgctg                                               <  1:1513895/140‑1 (MQ=255)

                                                                                 aggaACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGctgctg                                            >  2:996611/1‑140 (MQ=255)

                                                                                  ggaACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCtgg                                           <  2:543487/140‑1 (MQ=255)

                                                                                  ggaACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCtgg                                           >  1:498611/1‑140 (MQ=255)

                                                                                   gaACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCG‑GGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCtggtg                                         >  1:1363588/1‑140 (MQ=255)

                                                                                    aaCGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCtggtg                                         <  2:1022991/140‑1 (MQ=255)

                                                                                    aaCGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCtggtg                                         <  1:996611/140‑1 (MQ=255)

                                                                                    aaCGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCtggtg                                         <  1:232300/140‑1 (MQ=255)

                                                                                       gTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTgggg                                      <  1:717061/140‑1 (MQ=255)

                                                                                          tGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGaa                                   >  1:919315/1‑140 (MQ=255)

                                                                                           ggAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAAt                                  <  1:256461/140‑1 (MQ=255)

                                                                                               aaTTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTgg                              >  2:5897/1‑140 (MQ=255)

                                                                                                aTTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGgt                             <  1:1353866/140‑1 (MQ=255)

                                                                                                aTTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGgt                             <  1:1442427/140‑1 (MQ=255)

                                                                                                 tttCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGgtg                            >  2:1133293/1‑140 (MQ=255)

                                                                                                 tttCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGgtg                            >  2:512077/1‑140 (MQ=255)

                                                                                                 tttCACGACGAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGgtg                            >  1:23368/1‑140 (MQ=255)

                                                                                                     acgacgAACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGGTGTCgg                        <  1:1098651/140‑1 (MQ=255)

                                                                                                         cgaACCTGAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGGTGTCGGTaaa                    >  1:508723/1‑140 (MQ=255)

                                                                                                                gAATCAGCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGGTGTCGGTAAAACCGCGa             <  1:1793379/140‑1 (MQ=255)

                                                                                                                      gCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGGTGTCGGTAAAACCGCGAtt           >  1:602577/1‑136 (MQ=255)

                                                                                                                      gCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGGTGTCGGTAAAACCGCGAtt           <  2:602577/136‑1 (MQ=255)

                                                                                                                      gCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGGTGTCGGTAAAACCGCGATTGCgg       <  1:395725/140‑1 (MQ=255)

                                                                                                                      gCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGGTGTCGGTAAAACCGCGATTGCgg       <  1:462063/140‑1 (MQ=255)

                                                                                                                      gCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGGTGTCGGTAAAACCGCGATTGCgg       <  1:512077/140‑1 (MQ=255)

                                                                                                                      gCTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGGTGTCGGTAAAACCGCGATTGCgg       >  1:1689589/1‑140 (MQ=255)

                                                                                                                       cTTGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGGTGTCGGTAAAACCGCGATTGCGGa      >  1:1384208/1‑140 (MQ=255)

                                                                                                                        ttGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGGTGTCGGTAAAACCGCGATTGCGGaa     >  2:238771/1‑140 (MQ=255)

                                                                                                                        ttGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGGTGTCGGTAAAACCGCGATTGCGGaa     >  2:1036704/1‑140 (MQ=255)

                                                                                                                        ttGCGCGCGTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGGTGTCGGTAAAACCGCGATTGCGGaa     >  1:918385/1‑140 (MQ=255)

                                                                                                                           cgcgcgTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGGTGTCGGTAAAACCGCGATTGCGGa      <  1:1100185/136‑1 (MQ=255)

                                                                                                                           cgcgcgTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGGTGTCGGTAAAACCGCGATTGCGGa      >  2:1100185/1‑136 (MQ=255)

                                                                                                                           cgcgcgTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGGTGTCGGTAAAACCGCGATTGCGGAAGGt  >  1:965183/1‑140 (MQ=255)

                                                                                                                           cgcgcgTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGGTGTCGGTAAAACCGCGATTGCGGAAGGt  >  2:1271167/1‑140 (MQ=255)

                                                                                                                           cgcgcgTGGACGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGGTGTCGGTAAAACCGCGATTGCGGAAGGt  <  1:1133293/140‑1 (MQ=255)

CTCATGGCACGCGTAAAGACGAGCCGACACAGTCTTCTGATCCTGGCAGCCAGCCAAACAGCGAAGAACAAGCTGGTGGGGAGGAACGTATGGAGAATTTCACGACGAACCTGAATCAGCTTGCGCGCGTGGGCGGAATCGACCCACTGATTGGTCGTGAGAAGGAGCTGGAGCGTGCTATTCAGGTTCTCTGCCGTCGCCGTAAAAACAACCCGCTGCTGGTGGGGGAATCTGGTGTCGGTAAAACCGCGATTGCGGAAGGT  >  NC_000913/923679‑923941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A