Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A40 F60 I1 R1
|
23 |
105.9 |
3634506 |
98.9% |
3594526 |
138.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
1,020,666 |
Δ1,430 bp |
|
[sulA]–[yccS] |
[sulA], sxy, [yccS] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
1020666 |
1022095 |
1430 |
143 [0] |
[1] 145 |
[sulA]–[yccS] |
[sulA],sxy,[yccS] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 1020665 | 0 (0.000) | 138 (1.330) |
72/268 |
0.1 |
99.6% |
coding (255/510 nt) |
sulA |
cell division inhibitor SulA |
| ? | NC_000913 |
1022096 = |
1 (0.010) | coding (1788/2154 nt) |
yccS |
putative transporter YccS |
GATK/CNVnator alignment
N/A
