Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A35 F60 I1 R1	21	103.5	3513884	98.6%	3464689	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,329,129	C→A	V665V (GTC→GTA)	crfC →	clamp‑binding sister replication fork colocalization protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,329,129	0	C	A	100.0%	362.3 / NA	101	V665V (GTC→GTA)	crfC	clamp‑binding sister replication fork colocalization protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (46/55); total (46/55)

Only 100 of 102 total aligned reads displayed.

TGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTCGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGAATCGGTGGTCAGGCTGATGCAGCAGC  >  NC_000913/4328993‑4329265

tGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGAt                                                                                                                                       <  2:1262501/140‑1 (MQ=255)

      aGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCt                                                                                                                                 >  1:886544/1‑140 (MQ=255)

      aGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGACAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCt                                                                                                                                 >  2:710182/1‑140 (MQ=255)

        cccGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGt                                                                                                                               >  2:199697/1‑140 (MQ=255)

        cccGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGt                                                                                                                               >  2:1107122/1‑140 (MQ=255)

        cccGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGt                                                                                                                               >  1:726532/1‑140 (MQ=255)

        cccGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGt                                                                                                                               >  2:1618879/1‑140 (MQ=255)

        cccGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGt                                                                                                                               >  1:483454/1‑140 (MQ=255)

        cccGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGt                                                                                                                               >  1:1562257/1‑140 (MQ=255)

             cTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACgg                                                                                                                          <  2:1163970/140‑1 (MQ=255)

             cTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACgg                                                                                                                          <  1:660319/140‑1 (MQ=255)

             cTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACgg                                                                                                                          <  1:606888/140‑1 (MQ=255)

              tGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACggc                                                                                                                         <  2:1562257/140‑1 (MQ=255)

               ggggACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACggca                                                                                                                        <  2:1290091/140‑1 (MQ=255)

               ggggACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACggca                                                                                                                        <  2:1161/140‑1 (MQ=255)

               ggggACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACggca                                                                                                                        <  1:1233162/140‑1 (MQ=255)

               ggggACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACggca                                                                                                                        <  1:1126392/140‑1 (MQ=255)

               ggggACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACggca                                                                                                                        <  2:738892/140‑1 (MQ=255)

                       ggAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACggcagg                                                                                                                      >  1:1659908/1‑134 (MQ=255)

                       ggAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACggcagg                                                                                                                      <  2:1659908/134‑1 (MQ=255)

                        gAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAAt                                                                                                               <  1:787344/140‑1 (MQ=255)

                        gAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGACAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAAt                                                                                                               <  1:710182/140‑1 (MQ=255)

                          aaTGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATAc                                                                                                             <  1:1618879/140‑1 (MQ=255)

                             gagaAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACttt                                                                                                          <  2:286683/140‑1 (MQ=255)

                                aaaTCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACggcaggc                                                                                                                     <  1:301240/126‑1 (MQ=255)

                                aaaTCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACggcaggc                                                                                                                     >  2:301240/1‑126 (MQ=255)

                                  aTCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCg                                                                                                     <  1:745558/140‑1 (MQ=255)

                                    cACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCt                                                                                                   <  2:1437433/140‑1 (MQ=255)

                                      ccGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTgg                                                                                                 >  2:854592/1‑139 (MQ=255)

                                       cGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTggg                                                                                                <  1:641157/140‑3 (MQ=255)

                                       cGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAg                                                                                                <  1:702946/140‑1 (MQ=255)

                                        gACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGt                                                                                               >  2:697471/1‑140 (MQ=255)

                                        gACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGt                                                                                               <  2:726532/140‑1 (MQ=255)

                                            gAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCg                                                                                                     <  1:315974/130‑1 (MQ=255)

                                            gAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCg                                                                                                     >  2:315974/1‑130 (MQ=255)

                                               aCGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTc                                                                                        >  2:853868/1‑140 (MQ=255)

                                               aCGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTc                                                                                        >  2:1165228/1‑140 (MQ=255)

                                                 ggTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCAt                                                                                      >  1:1616320/1‑140 (MQ=255)

                                                    tGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGtt                                                                                   >  2:151757/1‑140 (MQ=255)

                                                       ttACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGTAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGa                                                                                <  1:853253/140‑1 (MQ=255)

                                                       ttACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGttgac                                                                                <  2:886544/140‑4 (MQ=255)

                                                         aCAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACg                                                                              <  1:1465480/140‑1 (MQ=255)

                                                          cAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACgg                                                                             <  1:709718/140‑1 (MQ=255)

                                                           aGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGttt                                                                                  <  2:303890/134‑1 (MQ=255)

                                                           aGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGttt                                                                                  >  1:303890/1‑134 (MQ=255)

                                                           aGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGa                                                                            >  1:1127920/1‑140 (MQ=255)

                                                            gtgtgtTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGaa                                                                           <  2:1198563/140‑1 (MQ=255)

                                                             tgtgtTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAAt                                                                          >  2:1168739/1‑140 (MQ=255)

                                                               tgtTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTa                                                                        >  1:285426/1‑140 (MQ=255)

                                                                gtTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGa                                                                                >  2:599961/1‑131 (MQ=255)

                                                                gtTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGa                                                                                <  1:599961/131‑1 (MQ=255)

                                                                 ttGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACa                                                                      >  2:490370/1‑140 (MQ=255)

                                                                  tGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAg                                                                     >  1:100409/1‑140 (MQ=255)

                                                                  tGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAg                                                                     >  1:1049964/1‑140 (MQ=255)

                                                                       cGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGAcgcg                                                                >  2:1391056/1‑140 (MQ=255)

                                                                        gAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGt                                                               <  1:165077/140‑1 (MQ=255)

                                                                           cATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTa                                                            >  1:1028000/1‑140 (MQ=255)

                                                                           cATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTa                                                            >  1:878959/1‑140 (MQ=255)

                                                                                aGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGttt                                                             >  2:1353593/1‑134 (MQ=255)

                                                                                aGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGttt                                                             <  1:1353593/134‑1 (MQ=255)

                                                                                aGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGa                                                       <  1:649642/140‑1 (MQ=255)

                                                                                aGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGa                                                       <  2:878959/140‑1 (MQ=255)

                                                                                aGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGa                                                       <  1:1165228/140‑1 (MQ=255)

                                                                                    cAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGt                                                   <  1:151757/140‑1 (MQ=255)

                                                                                     aGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTc                                                  <  2:1049964/140‑1 (MQ=255)

                                                                                              tctcTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGc                                         <  1:697471/140‑1 (MQ=255)

                                                                                               ctctATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCg                                        >  1:925035/1‑140 (MQ=255)

                                                                                                 ctATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTc                                      <  2:1028000/140‑1 (MQ=255)

                                                                                                 ctATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTc                                      >  2:688868/1‑140 (MQ=255)

                                                                                                 ctATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTc                                      >  1:755785/1‑140 (MQ=255)

                                                                                                 ctATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTc                                      >  2:818378/1‑140 (MQ=255)

                                                                                                    ttGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTcaac                                   >  1:449347/1‑140 (MQ=255)

                                                                                                      gCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGGCGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTcaacaa                                 >  2:935286/1‑140 (MQ=255)

                                                                                                        caacaaATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACaaaa                               <  2:449347/140‑1 (MQ=255)

                                                                                                         aacaaATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAAt                              >  2:1410260/1‑140 (MQ=255)

                                                                                                          acaaATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGct                                             <  2:437318/124‑1 (MQ=255)

                                                                                                          acaaATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGct                                             >  1:437318/1‑124 (MQ=255)

                                                                                                          acaaATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATg                             <  2:755785/140‑1 (MQ=255)

                                                                                                          acaaATGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATg                             <  2:249046/140‑1 (MQ=255)

                                                                                                            aaaTGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGaa                           >  1:525254/1‑140 (MQ=255)

                                                                                                              aTGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGAATc                         >  1:1188934/1‑140 (MQ=255)

                                                                                                              aTGGCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGAATc                         <  2:483454/140‑1 (MQ=255)

                                                                                                                 gCTAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGAATCggg                      >  2:368222/1‑139 (MQ=255)

                                                                                                                   tAAAGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGAATCggtgg                    <  1:688868/140‑1 (MQ=255)

                                                                                                                    aaaGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGAATCggtggt                   <  2:100409/140‑1 (MQ=255)

                                                                                                                    aaaGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGAATCggtggt                   <  1:1107122/140‑1 (MQ=255)

                                                                                                                    aaaGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGAATCggtggt                   <  2:610772/140‑1 (MQ=255)

                                                                                                                    aaaGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGAATCggtggt                   <  1:854592/140‑1 (MQ=255)

                                                                                                                    aaaGTTCTGGCAGAGCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGAATCggtggt                   <  2:1188934/140‑1 (MQ=255)

                                                                                                                            ggCAGAGCAGGTAGATGAATCTGGTCCGGCAGGGATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAACTACAGACGCGTCTACGCGAAAGGCTGGCTCTGCGTCAACAAAATGAAGCGGTGGTCAGGCTGa           <  2:843982/140‑1 (MQ=255)

                                                                                                                               agagCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGAATCGGTGGTCAGGCTGATgc        <  2:525254/140‑1 (MQ=255)

                                                                                                                                 agCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGAATCggtggt                   >  2:1085106/1‑127 (MQ=255)

                                                                                                                                 agCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGAATCggtggt                   <  1:1085106/127‑1 (MQ=255)

                                                                                                                                 agCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGAATCGGTGGTCAGGCTGATgcag      >  2:627403/1‑140 (MQ=255)

                                                                                                                                 agCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGAATCGGTGGTCAGGCTGATgcag      >  1:67756/1‑140 (MQ=255)

                                                                                                                                  gCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGAATCGGTGGTCAGGCTGATgcagc     <  1:818378/140‑1 (MQ=255)

                                                                                                                                  gCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGAATCGGTGGTCAGGCTGATgc        >  1:1498851/1‑137 (MQ=255)

                                                                                                                                  gCAGGTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGAATCGGTGGTCAGGCTGATgc        <  2:1498851/137‑1 (MQ=255)

                                                                                                                                     ggTAGATGAATCTGTTACGGTAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGAATCGGTGGTCAGGCTGATgcagcagc  <  1:199697/140‑1 (MQ=255)

                                                                                                                                     ggTAGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGAATCGGTGGTCAGGCTGATgcagcagc  <  1:1168739/140‑1 (MQ=255)

TGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTCGATGAATCTGTTACGGCAGGCATGAATACTTTTTTCGCTGAGTTCGCTTCATGTTTGACGGAATTACAGACGCGTTTACGCGAAAGTCTGGCTCTGCGTCAACAAAATGAATCGGTGGTCAGGCTGATGCAGCAGC  >  NC_000913/4328993‑4329265

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A