Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F60 I1 R1 21 41.4 1402642 98.7% 1384407 138.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,467,821 A→G pseudogene (2430/2518 nt) ydbA → putative outer membrane protein, N‑terminal fragment

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,467,8210AG100.0% 216.0 / NA 58pseudogene (2430/2518 nt)ydbAputative outer membrane protein, N‑terminal fragment
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (31/27);  total (31/27)

CAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCC  >  NC_000913/1467687‑1467953
                                                                                                                                      |                                                                                                                                    
cAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGa                                                                                                                                 >  2:322705/1‑140 (MQ=255)
             tGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTg                                                                                                                    >  1:241678/1‑140 (MQ=255)
             tGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTg                                                                                                                    <  2:647707/140‑1 (MQ=255)
             tGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTg                                                                                                                    >  1:560932/1‑140 (MQ=255)
             tGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTg                                                                                                                    >  1:43186/1‑140 (MQ=255)
               cgcACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCt                                                                                                                          <  1:216056/132‑1 (MQ=255)
               cgcACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCt                                                                                                                          >  2:216056/1‑132 (MQ=255)
                     ggATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTgg                                                                                                            >  2:441950/1‑140 (MQ=255)
                         ataGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGt                                                                                                        <  1:139123/140‑1 (MQ=255)
                                taCCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAg                                                                                                         >  1:100154/1‑132 (MQ=255)
                                taCCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAg                                                                                                         <  2:100154/132‑1 (MQ=255)
                                taCCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGcgcta                                                                                                 >  2:676582/1‑140 (MQ=255)
                                taCCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGcgcta                                                                                                 >  2:189191/1‑140 (MQ=255)
                                taCCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGcgcta                                                                                                 >  1:268368/1‑140 (MQ=255)
                                 aCCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGcgctac                                                                                                <  1:644885/140‑1 (MQ=255)
                                     gCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGcgctacgcta                                                                                            >  2:422189/1‑140 (MQ=255)
                                     gCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGcgctacgcta                                                                                            >  1:672014/1‑140 (MQ=255)
                                      cGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGgc                                                                                                     >  2:59043/1‑130 (MQ=255)
                                      cGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGgc                                                                                                     <  1:59043/130‑1 (MQ=255)
                                      cGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTaa                                                                                           >  1:664751/1‑140 (MQ=255)
                                           ttGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGgcgc                                                                                                   >  1:303043/1‑127 (MQ=255)
                                           ttGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGgcgc                                                                                                   <  2:303043/127‑1 (MQ=255)
                                            tGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGc                                                                                     <  2:268368/140‑1 (MQ=255)
                                            tGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGc                                                                                     <  1:676582/140‑1 (MQ=255)
                                            tGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGc                                                                                     <  2:205033/140‑1 (MQ=255)
                                             gTCGGTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCa                                                                                    <  2:220773/140‑1 (MQ=255)
                                                     tggtgAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATAttt                                                                            >  1:494851/1‑139 (MQ=255)
                                                     tggtgAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTg                                                                            >  2:470189/1‑140 (MQ=255)
                                                      ggtgAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGa                                                                           <  1:322705/140‑1 (MQ=255)
                                                          aGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGt                                                                       >  1:652426/1‑140 (MQ=255)
                                                          aGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGt                                                                       >  2:607446/1‑140 (MQ=255)
                                                           gtcgtcGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGtt                                                                      <  2:649817/140‑1 (MQ=255)
                                                                   tataTCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGTGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAAcat                                                              <  1:544313/140‑1 (MQ=255)
                                                                      atCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAAcatcat                                                           <  2:560932/140‑1 (MQ=255)
                                                                          gAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGTGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGa                                                       >  2:481484/1‑140 (MQ=255)
                                                                             tGGAGATACGACAATCAGCGGAGAATTCCCTCTGGTGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACaa                                                    <  1:481484/140‑1 (MQ=255)
                                                                             tGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACaa                                                    <  1:422189/140‑1 (MQ=255)
                                                                             tGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACaa                                                    >  2:191561/1‑140 (MQ=255)
                                                                             tGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACaa                                                    >  2:286116/1‑140 (MQ=255)
                                                                              ggAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAg                                                   <  2:474463/140‑1 (MQ=255)
                                                                                  aTACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATg                                                          >  2:591681/1‑129 (MQ=255)
                                                                                  aTACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATg                                                          <  1:591681/129‑1 (MQ=255)
                                                                                  aTACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAAcc                                               <  2:43186/140‑1 (MQ=255)
                                                                                     cGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACaa                                                    <  2:376471/132‑1 (MQ=255)
                                                                                     cGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACaa                                                    >  1:376471/1‑132 (MQ=255)
                                                                                         aaTCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGAtt                                        <  2:652426/140‑1 (MQ=255)
                                                                                          aTCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCt                                             >  1:386686/1‑134 (MQ=255)
                                                                                          aTCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCt                                             <  2:386686/134‑1 (MQ=255)
                                                                                                ggAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCt                                 >  1:301492/1‑140 (MQ=255)
                                                                                                    aaTTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTatat                             <  1:189191/140‑1 (MQ=255)
                                                                                                            ctGGGGTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGAc                     >  1:347957/1‑140 (MQ=255)
                                                                                                              ggggTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAGATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACAt                   <  2:241678/140‑1 (MQ=255)
                                                                                                              ggggTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGcc                                    >  2:574493/1‑123 (MQ=255)
                                                                                                              ggggTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGcc                                    <  1:574493/123‑1 (MQ=255)
                                                                                                              ggggTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACAt                   >  2:667870/1‑140 (MQ=255)
                                                                                                               gggTTTGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATc                  >  1:435520/1‑140 (MQ=255)
                                                                                                                    tGCCGGGGTTATTCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTTa             <  2:347957/140‑1 (MQ=255)
                                                                                                                               ttCGGGTGCAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAAccc  >  2:328697/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                    
CAGGTTACTTCCTTGCGCACAGGATATAGTTATACCAGCGTTATTGTCGTTAGTGGTGAGTCGTCGGTATATCTGAATGGAGATACGACAATCAGCGGAGAATTCCCTCTGGGGTTTGCCGGGGTTATTCGGGTACAGGATAAAGCTTTGCTGGAAATTGGCAGTGGCGCTACGCTAACAATGCAGGATATTGACAGTTTTGAACATCATGGGACAAGAACCCTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCC  >  NC_000913/1467687‑1467953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A