Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A28 F60 I1 R1
|
17 |
39.6 |
1345070 |
98.9% |
1330274 |
138.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,484,703 |
C→G |
A417P (GCA→CCA) |
pepA ← |
aminopeptidase A/I |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,484,703 | 0 | C | G | 100.0%
| 77.9
/ NA
| 22 | A417P (GCA→CCA) | pepA | aminopeptidase A/I |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (11/11); total (11/11) |
CTTACGGGTAAAGCGTGACAGGAAGCAACCTGCGGTAATCGCCCCACCAGGACGACCGCCAATGTTCGCCATATCGGCAAAATTGGACTCCAGTTGTTCCTGATACTCGTCACCCAGCGGTAAGCGCCATGCGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATGGGCCAGCGGATTATGGTTCGCCATCAGACCAGTAATATGATGACCCAGCGCGATCACGCAGGCACCGGTCAGCGTCGCCACGTCAATCAC > NC_000913/4484572‑4484832
|
cTTACGGGTAAAGCGTGACAGGAAGCAACCTGCGGTAATCGCCCCACCAGGACGACCGCCAATGTTCGCCATATCGGCAAAATTGGACTCCAGTTGTTCCTGATACTCGTCACCCAGCGGTAAGCGCCATGGGCGGTCAc > 1:149300/1‑140 (MQ=255)
cTTACGGGTAAAGCGTGACAGGAAGCAACCTGCGGTAATCGCCCCACCAGGACGACCGCCAATGTTCGCCATATCGGCAAAATTGGACTCCAGTTGTTCCTGATACTCGTCACCCAGCGGTAAGCGCCATGGGCGGTCAc > 1:190013/1‑140 (MQ=255)
gCGGTAATCGCCCCACCAGGACGACCGCCAATGTTCGCCATATCGGCAAAATTGGACTCCAGTTGTTCCTGATACTCGTCACCCAGCGGTAAGCGCCATGGGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATg > 1:469637/1‑140 (MQ=255)
aaTCGCCCCACCAGGACGACCGCCAATGTTCGCCATATCGGCAAAATTGGACTCCAGTTGTTCCTGATACTCGTCACCCAGCGGTAAGCGCCATGGGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATGGGCCa < 1:196391/140‑1 (MQ=255)
tCGCCCCACCAGGACGACCGCCAATGTTCGCCATATCGGCAAAATTGGACTCCAGTTGTTCCTGATACTCGTCACCCAGCGGTAAGCGCCATGGGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATGGGCCAGc > 2:246559/1‑140 (MQ=255)
gCCAATGTTCGCCATATCGGCAAAATTGGACTCCAGTTGTTCCTGATACTCGTCACCCAGCGGTAAGCGCCATGGGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATGGGCCAGCGGATTATGGTTCGCCATCa < 1:570106/140‑1 (MQ=255)
aaTGTTCGCCATATCGGCAAAATTGGACTCCAGTTGTTCCTGATACTCGTCACCCAGCGGTAAGCGCCATGGGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATGGGCCAGCGGATTATGGTTCGCCATCAGAc < 1:309579/140‑1 (MQ=255)
aaTGTGCGCCATAGCGGCAAAATTGGACTCCAGTTGTTCCTGATACTCGTCACCCAGCGGTAAGCGCCATGGGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATGGGCCAGCGGATTATGGTTCGCCATCAGAc < 2:388456/140‑1 (MQ=255)
aTGTTCGCCATATCGGCAAAATTGGACTCCAGTTGTTCCTGATACTCGTCACCCAGCGGTAAGCGCCATGGGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATGGGCCAGCGGATTATGGTTCGCCATCAGAcc < 1:19655/140‑1 (MQ=255)
gTTCGCCATATCGGCAAAATTGGACTCCAGTTGTTCCTGATACTCGTCACCCAGCGGTAAGCGCCATGGGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATGGGCCAGCGGATTATGGTTCGCCATCAGACCAg < 2:532418/140‑1 (MQ=255)
tCGCCATATCGGCAAAATTGGACTCCAGTTGTTCCTGATACTCGTCACCCAGCGGTAAGCGCCATGGGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATGGGCCAGCGGATTATGGTTCGCCATCAGACCAGTa < 1:246559/140‑1 (MQ=255)
ccATATCGGCAAAATTGGACTCCAGTTGTTCCTGATACTCGTCACCCAGCGGTAAGCGCCATGGGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATGGGCCAGCGGATTATGGTTCGCCATCAGACCAGTAata > 1:120222/1‑140 (MQ=255)
cAAAATTGGACTCCAGTTGTTCCTGATACTCGTCACCCAGCGGTAAGCGCCATGGGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATGGGCCAGCGGATTATGGTTCGCCATCAGACCAGTAATATGATGAccc > 2:519141/1‑140 (MQ=255)
cAGTTGTTCCTGATACTCGTCACCCAGCGGTAAGCGCCATGGGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATGGGCCAGCGTATTATGGTTCGCCATCAGACCAGTAATATGATGACCCAGCGCGATCACGc > 1:94120/1‑140 (MQ=255)
cAGTTGTTCCTGATACTCGTCACCCAGCGGTAAGCGCCATGGGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATGGGCCAGCGGATTATGGTTCGCCATCAGACCAGTAATATGATGACCCAGCGCGATCACGc > 1:168056/1‑140 (MQ=255)
cAGTTGTTCCTGATACTCGTCACCCAGCGGTAAGCGCCATGGGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATGGGCCAGCGGATTATGGTTCGCCATCAGACCAGTAATATGATGACCCAGCGCGATCACGc < 2:120222/140‑1 (MQ=255)
gttgttCCTGATACTCGTCACCCAGCGGTAAGCGCCATGGGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATGGGCCAGCGGATTATGGTTCGCCATCAGACCAGTAATATGATGACCCAGCGCGATCACGCAg > 2:302536/1‑140 (MQ=255)
tGATACTCGTCACCCAGCGGTAAGCGCCATGGGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATGGGCCAGCGTATTATGGTTCGCCATCAGACCAGTAATATGATGACCCAGCGCGATCACGCAGGCACCGGt < 2:94120/140‑1 (MQ=255)
gTCACCCAGCGGTAAGCGCCATGGGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATGGGCCAGCGGATTATGGTTCGCCATCAGACCAGTAATATGATGACCCAGCGCGATCACGCAGGCACCGGTCAGCGTCg < 2:469637/140‑1 (MQ=255)
gTCACCCAGCGGTAAGCGCCATGGGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATGGGCCAGCGGATTATGGTTCGCCATCAGACCAGTAATATGATGACCCAGCGCGATCACGCAGGCACCGGTCAGCGTCg < 2:168056/140‑1 (MQ=255)
cccAGCGGTAAGCGCCATGGGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATGGGCCAGCGGATTATGGTTCGCCATCAGACCAGTAATATGATGACCCAGCGCGATCACGCAGGCACCGGTCAGCGTCGCCAc > 2:272377/1‑140 (MQ=255)
aaGCGCCATGGGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATGGGCCAGCGGATTATGGTTCGCCATCAGACCAGTAATATGATGACCCAGCGCGATCACGCAGGCACCGGTCAGCGTCGCCACGTCAATCAc > 1:132723/1‑140 (MQ=255)
|
CTTACGGGTAAAGCGTGACAGGAAGCAACCTGCGGTAATCGCCCCACCAGGACGACCGCCAATGTTCGCCATATCGGCAAAATTGGACTCCAGTTGTTCCTGATACTCGTCACCCAGCGGTAAGCGCCATGCGCGGTCACCGGATTGTTCAGACGCGGCAATCAGTTCATGGGCCAGCGGATTATGGTTCGCCATCAGACCAGTAATATGATGACCCAGCGCGATCACGCAGGCACCGGTCAGCGTCGCCACGTCAATCAC > NC_000913/4484572‑4484832
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
