Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A24 F60 I1 R1	14	76.3	2604456	98.8%	2573202	138.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,467,439	T→G	P3P (CCT→CCG)	mgtL →	leader peptide MgtL

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,467,439	0	T	G	100.0%	282.3 / NA	72	P3P (CCT→CCG)	mgtL	leader peptide MgtL
Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (39/33); total (39/33)

CAGCAATGGGTAAAGTCTGGTTTATCGTTGGTTTAGTTGTCAGCAGGTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCTGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACGTCCCTGCTCAGCTTTATTACCTTCAGGTAAGGCTTCGCCA  >  NC_000913/4467303‑4467575

cAGCAATGGGTAAAGTCTGGTTTATCGTTGGTTTAGTTGTCAGCAGGTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGAt                                                                                                                                       >  2:248150/1‑140 (MQ=255)

        ggTAAAGTCTGGTTTATCGTTGGTTTAGTTGTCAGCAGGTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGcc                                                                                                                               >  1:987517/1‑140 (MQ=255)

          tAAAGTCTGGTTTATCGTTGGTTTAGTTGTCAGCAGGTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCctc                                                                                                                             <  1:1074793/140‑1 (MQ=255)

           aaaGTCTGGTTTATCGTTGGTTTAGTTGTCAGCAGGTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCctct                                                                                                                            >  1:384849/1‑140 (MQ=255)

                  ggTTTATCGTTGGTTTAGTTGTCAGCAGGTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGa                                                                                                                     >  1:79071/1‑140 (MQ=255)

                        tCGTTGGTTTAGTTGTCAGCAGGTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCNGCGCTTTTTTCACTTACCGGAGGNTATATGGAACCGGATCCCACGCCTCTCCCTCGACGgaga                                                                                                               >  2:1260004/1‑140 (MQ=255)

                        tCGTTGGTTTAGTTGTCAGCAGGTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGgaga                                                                                                               >  1:447220/1‑140 (MQ=255)

                         cGTTGGTTTAGTTGTCAGCAGGTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGAt                                                                                                              >  1:1259614/1‑140 (MQ=255)

                          gTTGGTTTAGTTGTCAGCAGGTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGAtt                                                                                                             <  1:408238/140‑1 (MQ=255)

                          gTTGGTTTAGTTGTCAGCAGGTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCATCGACGGAGAtt                                                                                                             <  1:728582/140‑1 (MQ=255)

                                        cagcagGTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGt                                                                                               >  2:360093/1‑140 (MQ=255)

                                        cagcagGTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGt                                                                                               >  1:69669/1‑140 (MQ=255)

                                             ggTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGcc                                                                                          <  2:987517/140‑1 (MQ=255)

                                              gTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTaa                                                                                                           <  1:843644/122‑1 (MQ=255)

                                              gTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTaa                                                                                                           >  2:843644/1‑122 (MQ=255)

                                              gTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGccc                                                                                         >  2:815722/1‑140 (MQ=255)

                                              gTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGccc                                                                                         >  1:1126043/1‑140 (MQ=255)

                                                     atCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCtttt                                                                                  >  2:1074826/1‑140 (MQ=255)

                                                        gCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCAc                                                                               >  1:924960/1‑140 (MQ=255)

                                                        gCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCAc                                                                               >  1:866770/1‑140 (MQ=255)

                                                         ccATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACg                                                                              >  1:1233911/1‑140 (MQ=255)

                                                         ccATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACg                                                                              >  1:67269/1‑140 (MQ=255)

                                                         ccATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACg                                                                              >  1:1160692/1‑140 (MQ=255)

                                                         ccATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACg                                                                              <  2:821995/140‑1 (MQ=255)

                                                         ccATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACg                                                                              >  1:962968/1‑140 (MQ=255)

                                                         ccATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACg                                                                              >  1:158141/1‑140 (MQ=255)

                                                         ccATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGAGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACg                                                                              >  2:355724/1‑140 (MQ=255)

                                                           aTAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGc                                                                            <  1:742940/140‑1 (MQ=255)

                                                           aTAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGc                                                                            <  2:866770/140‑1 (MQ=255)

                                                                   tACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCgg                                                                    <  2:1126043/140‑1 (MQ=255)

                                                                   tACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCgg                                                                    <  2:336159/140‑1 (MQ=255)

                                                                   tACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCgg                                                                    <  2:199467/140‑1 (MQ=255)

                                                                    aCGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTa                                                                        <  1:699896/135‑1 (MQ=255)

                                                                    aCGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTa                                                                        >  2:699896/1‑135 (MQ=255)

                                                                       aaTATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGc                                                                >  1:950656/1‑140 (MQ=255)

                                                                          attattGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTa                                                             <  1:678565/140‑1 (MQ=255)

                                                                            tattGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAg                                                           >  1:375096/1‑140 (MQ=255)

                                                                             attGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGATATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAgg                                                          >  2:1210269/1‑140 (MQ=255)

                                                                                ggATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCg                                                       <  1:202419/140‑1 (MQ=255)

                                                                                 gATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGt                                                      <  1:1074826/140‑1 (MQ=255)

                                                                                  aTTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTg                                                     >  2:569855/1‑140 (MQ=255)

                                                                                  aTTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTg                                                     <  2:447220/140‑1 (MQ=255)

                                                                                    tctcCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGAc                                                   <  2:950656/140‑1 (MQ=255)

                                                                                      tcCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGt                                                      >  1:848452/1‑135 (MQ=255)

                                                                                      tcCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGt                                                      <  2:848452/135‑1 (MQ=255)

                                                                                      tcCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGt                                                 >  2:63635/1‑140 (MQ=255)

                                                                                      tcCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGt                                                 <  2:400106/140‑1 (MQ=255)

                                                                                      tcCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGt                                                 >  1:50718/1‑140 (MQ=255)

                                                                                      tcCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGATATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGt                                                 <  1:1210269/140‑1 (MQ=255)

                                                                                           attattTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTaa                                            >  1:937880/1‑140 (MQ=255)

                                                                                           attattTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTaa                                            <  2:158141/140‑1 (MQ=255)

                                                                                                ttGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACGTcc                                       >  1:870403/1‑140 (MQ=255)

                                                                                                ttGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACGTcc                                       <  2:79071/140‑1 (MQ=255)

                                                                                                 tGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACGTccc                                      >  1:1198002/1‑140 (MQ=255)

                                                                                                  gcggcgCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGt                                                      >  1:181665/1‑123 (MQ=255)

                                                                                                  gcggcgCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGt                                                      <  2:181665/123‑1 (MQ=255)

                                                                                                   cggcgCTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACGTCCCTg                                    >  1:809014/1‑140 (MQ=255)

                                                                                                     gcgcTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACGTCCCTGCt                                  <  1:569855/140‑1 (MQ=255)

                                                                                                     gcgcTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACGTCCCTGCt                                  <  2:384849/140‑1 (MQ=255)

                                                                                                     gcgcTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACGTCCCTGCt                                  <  2:1160692/140‑1 (MQ=255)

                                                                                                      cgcTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACGTCCCTGCTc                                 <  1:815722/140‑1 (MQ=255)

                                                                                                      cgcTTTTTTCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACGTCCCTGCTc                                 <  2:441357/140‑1 (MQ=255)

                                                                                                          tttttCACTTACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACGTCCCTGCTCAGCt                             <  1:355724/140‑1 (MQ=255)

                                                                                                                  ttACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACGTCCCTGCTCAGCTttat                         >  2:538712/1‑136 (MQ=255)

                                                                                                                  ttACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACGTCCCTGCTCAGCTttat                         <  1:538712/136‑1 (MQ=255)

                                                                                                                   tACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACGTCCCTGCTCAGCTTTATTACCt                    <  1:785575/140‑1 (MQ=255)

                                                                                                                   tACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACGTCCCTGCTCAGCTTTATTACCt                    >  1:642506/1‑140 (MQ=255)

                                                                                                                   tACCGGAGGTTATATGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACATCCCTGCTCAGCTTTATTACCt                    <  2:1157171/140‑1 (MQ=255)

                                                                                                                              atatGGAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACGTCCCTGCTCAGCTTTATTACCTTCAGGTAAGGc         >  2:297999/1‑140 (MQ=255)

                                                                                                                                  ggAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACGTCCCTGCTCAGCTTTATTACCTTCAGGTAAGGCTTCg     >  1:704381/1‑140 (MQ=255)

                                                                                                                                   gAACCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACGTCCCTGCTCAGCTTTATTACCTTCAGGTAAGGCTTCGc    >  1:429310/1‑140 (MQ=255)

                                                                                                                                    aaCCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACGTCCCTGCTCAGCTTTATTACCTTCAGGTAAGGCTTCGcc   >  1:440373/1‑140 (MQ=255)

                                                                                                                                     aCCGGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACGTCCCTGCTCAGCTTTATTACCTTCAGGTAAGGCTTCGCCa  <  2:949029/140‑1 (MQ=255)

CAGCAATGGGTAAAGTCTGGTTTATCGTTGGTTTAGTTGTCAGCAGGTATTATATCGCCATAGATGCTACGAATATTATTGGATTCTCCTTATTATTTGCGGCGCTTTTTTCACTTACCGGAGGTTATATGGAACCTGATCCCACGCCTCTCCCTCGACGGAGATTAAAACTTTTCCGGTAAGCCCGTCTTTTCACGGCGTTACCGGATGCGTAAGGCCGTGACGTTTTAACGTCCCTGCTCAGCTTTATTACCTTCAGGTAAGGCTTCGCCA  >  NC_000913/4467303‑4467575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A