Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A36 F60 I1 R1 13 103.9 3554956 98.7% 3508741 138.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,888,180 T→G C451W (TGT→TGG)  mnmE → 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,888,1800TG100.0% 382.8 / NA 97C451W (TGT→TGG) mnmE5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (53/44);  total (53/44)

GGCAAAGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAA  >  NC_000913/3888043‑3888315
                                                                                                                                         |                                                                                                                                       
ggCAAAGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGCATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGAt                                                                                                                                       >  1:661409/1‑140 (MQ=255)
ggCAAAGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGAt                                                                                                                                       >  2:1659340/1‑140 (MQ=255)
ggCAAAGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGAt                                                                                                                                       >  1:760834/1‑140 (MQ=255)
ggCAAAGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGAt                                                                                                                                       >  2:781975/1‑140 (MQ=255)
ggCAAAGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGAt                                                                                                                                       >  2:1284594/1‑140 (MQ=255)
ggCAAAGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGAt                                                                                                                                       >  2:938649/1‑140 (MQ=255)
ggCAAAGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGAt                                                                                                                                       >  2:1408670/1‑140 (MQ=255)
ggCAAAGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGAt                                                                                                                                       >  2:969396/1‑140 (MQ=255)
ggCAAAGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGAt                                                                                                                                       >  2:610801/1‑140 (MQ=255)
ggCAAAGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGAt                                                                                                                                       <  1:1098174/140‑1 (MQ=255)
ggCAAAGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGAt                                                                                                                                       >  1:1210373/1‑140 (MQ=255)
 gCAAAGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGAtt                                                                                                                                      >  2:591884/1‑140 (MQ=255)
 gCAAAGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGAtt                                                                                                                                      >  2:324355/1‑140 (MQ=255)
 gCAAAGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGAtt                                                                                                                                      >  2:1398815/1‑140 (MQ=255)
  cAAAGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTg                                                                                                                                     <  1:1342112/140‑1 (MQ=255)
  cAAAGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTg                                                                                                                                     >  1:1243259/1‑140 (MQ=255)
     aGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGgta                                                                                                                                  >  1:1022256/1‑140 (MQ=255)
     aGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGgta                                                                                                                                  <  1:1408670/140‑1 (MQ=255)
     aGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGgta                                                                                                                                  >  1:1099125/1‑140 (MQ=255)
     aGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGgta                                                                                                                                  >  2:546895/1‑140 (MQ=255)
          aaCTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGgtaagtaa                                                                                                                             <  1:186979/140‑1 (MQ=255)
          aaCTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGgtaagtaa                                                                                                                             >  2:1437675/1‑140 (MQ=255)
               ttGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACcgcg                                                                                                                        >  1:1536360/1‑140 (MQ=255)
               ttGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACcgcg                                                                                                                        <  2:132413/140‑1 (MQ=255)
                 gggAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCt                                                                                                                      >  2:364635/1‑140 (MQ=255)
                 gggAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCt                                                                                                                      >  1:437426/1‑140 (MQ=255)
                       cTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGaa                                                                                                                <  1:1659340/140‑1 (MQ=255)
                         gggCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGc                                                                                                              >  2:1405871/1‑140 (MQ=255)
                         gggCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGc                                                                                                              >  1:1726109/1‑140 (MQ=255)
                               gTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCAtt                                                                                                        >  2:676680/1‑140 (MQ=255)
                               gTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCAtt                                                                                                        <  1:1437675/140‑1 (MQ=255)
                               gTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCAtt                                                                                                        >  1:565775/1‑140 (MQ=255)
                               gTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCAtt                                                                                                        <  2:437426/140‑1 (MQ=255)
                               gTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCAtt                                                                                                        >  2:710103/1‑140 (MQ=255)
                                tGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTc                                                                                                       >  2:1104734/1‑140 (MQ=255)
                                 gAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCt                                                                                                      <  2:1726109/140‑1 (MQ=255)
                                   aCTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGa                                                                                                    <  1:792880/140‑1 (MQ=255)
                                   aCTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGa                                                                                                    <  2:1239578/140‑1 (MQ=255)
                                   aCTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGa                                                                                                    <  2:661409/140‑1 (MQ=255)
                                   aCTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGa                                                                                                    <  1:1624730/140‑1 (MQ=255)
                                    ctgctgGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGAc                                                                                                   >  1:1620346/1‑140 (MQ=255)
                                     tgctgGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACt                                                                                                  <  1:1284594/140‑1 (MQ=255)
                                       ctgGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGt                                                                                                >  2:719927/1‑140 (MQ=255)
                                            ggAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGAt                                                                                           <  1:938649/140‑1 (MQ=255)
                                               agagTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCg                                                                                        >  1:1031620/1‑140 (MQ=255)
                                                 agTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGgc                                                                                      >  2:1726867/1‑140 (MQ=255)
                                                  gTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGgct                                                                                     <  2:760834/140‑1 (MQ=255)
                                                  gTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGgct                                                                                     <  2:658154/140‑1 (MQ=255)
                                                    tGCATCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGgcttc                                                                                   >  2:269264/1‑140 (MQ=255)
                                                     gCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGgcttcg                                                                                  >  1:1171814/1‑140 (MQ=255)
                                                       gTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGgcttcgct                                                                                <  1:80048/140‑1 (MQ=255)
                                                           ggCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCAt                                                                            >  2:192064/1‑140 (MQ=255)
                                                              acaGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGt                                                                         <  1:719927/140‑1 (MQ=255)
                                                                 gcagAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGgcttcgct                                                                                <  2:751124/130‑1 (MQ=255)
                                                                 gcagAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGgcttcgct                                                                                >  1:751124/1‑130 (MQ=255)
                                                                 gcagAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTAc                                                                      <  2:1162342/140‑1 (MQ=255)
                                                                 gcagAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTAc                                                                      >  2:775416/1‑140 (MQ=255)
                                                                  cagAACTTAAGCGAAATCACCGGGGAATTTACTTCAGATGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTAcc                                                                     <  1:376403/140‑1 (MQ=255)
                                                                  cagAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTAcc                                                                     <  2:565775/140‑1 (MQ=255)
                                                                  cagAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTAcc                                                                     >  1:795301/1‑140 (MQ=255)
                                                                    gAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCAc                                                                   >  2:1390332/1‑140 (MQ=255)
                                                                    gAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCAc                                                                   <  1:1390332/140‑1 (MQ=255)
                                                                    gAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCAc                                                                   <  1:781975/140‑1 (MQ=255)
                                                                      aCTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTc                                                                 <  1:269264/140‑1 (MQ=255)
                                                                       cTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTcc                                                                <  1:364635/140‑1 (MQ=255)
                                                                       cTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTcc                                                                <  2:1127407/140‑1 (MQ=255)
                                                                       cTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTcc                                                                >  2:1275542/1‑140 (MQ=255)
                                                                          aaGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGt                                                             >  2:512701/1‑140 (MQ=255)
                                                                            gCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTa                                                           <  1:192064/140‑1 (MQ=255)
                                                                            gCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTa                                                           <  2:1022256/140‑1 (MQ=255)
                                                                               aaaTCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCa                                                                    <  2:1568071/128‑1 (MQ=255)
                                                                               aaaTCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCa                                                                    >  1:1568071/1‑128 (MQ=255)
                                                                               aaaTCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTc                                                        >  1:841072/1‑140 (MQ=255)
                                                                                       ggggAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAAccc                                                <  1:546895/140‑1 (MQ=255)
                                                                                          gAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCttt                                             >  2:1501244/1‑140 (MQ=255)
                                                                                          gAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCttt                                             >  1:1155680/1‑140 (MQ=255)
                                                                                              ttACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCttttttt                                         <  1:1405871/140‑1 (MQ=255)
                                                                                                 cTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTaaa                                      <  2:1210373/140‑1 (MQ=255)
                                                                                                   tCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACa                                    >  1:227384/1‑140 (MQ=255)
                                                                                                     aGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACAtt                                  <  1:969396/140‑1 (MQ=255)
                                                                                                       acgacCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTaa                                >  1:177885/1‑140 (MQ=255)
                                                                                                       acgacCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTaa                                >  2:913321/1‑140 (MQ=255)
                                                                                                       acgacCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTaa                                >  1:999177/1‑140 (MQ=255)
                                                                                                         gacCTGCTGGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTaaaa                              <  2:999177/140‑1 (MQ=255)
                                                                                                            ctgctgGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTc                           >  1:502137/1‑140 (MQ=255)
                                                                                                              gctgGGGCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCtt                         >  2:877888/1‑140 (MQ=255)
                                                                                                                 ggggCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACg                      <  2:1390796/140‑1 (MQ=255)
                                                                                                                 ggggCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACg                      <  2:1031620/140‑1 (MQ=255)
                                                                                                                  gggCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGt                     <  1:676680/140‑1 (MQ=255)
                                                                                                                  gggCGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTACTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGt                     <  1:775416/140‑1 (MQ=255)
                                                                                                                     cGGATTTTCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAAt                  >  2:453013/1‑140 (MQ=255)
                                                                                                                         ttttCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGTGGCCTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTtat              >  1:1028545/1‑140 (MQ=255)
                                                                                                                          tttCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTtata             <  1:879361/140‑1 (MQ=255)
                                                                                                                          tttCTCCAGCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTtata             <  1:610801/140‑1 (MQ=255)
                                                                                                                                  gCTTCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTaa     >  1:145044/1‑140 (MQ=255)
                                                                                                                                     tCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTaaaaa  <  1:877888/140‑1 (MQ=255)
                                                                                                                                     tCTGGATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTaaaaa  <  1:610078/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
GGCAAAGCGCAACTGTTGGGAGCCTGGGCAGGTGAACTGCTGGCGGAAGAGTTGCGTCTGGCACAGCAGAACTTAAGCGAAATCACCGGGGAATTTACTTCAGACGACCTGCTGGGGCGGATTTTCTCCAGCTTCTGTATTGGTAAGTAACCGCGCTTACGAAGCCGCATTCTGACTGTCAGATGCGGCTTCGCTTCATTGTTACCACTCCTGTTATTCCTCAACCCTTTTTTTAAACATTAAAATTCTTACGTAATTTATAATCTTTAAAAA  >  NC_000913/3888043‑3888315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A